miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31669 3' -56.8 NC_006883.1 + 112315 0.66 0.966036
Target:  5'- aCUGGU-GGAUCUGGuGGUgcuaCUGGuGGa -3'
miRNA:   3'- -GGUCAuCCUGGACCuCCAg---GACCuCC- -5'
31669 3' -56.8 NC_006883.1 + 23443 0.66 0.948365
Target:  5'- uCCuGUAuuaccuGGACCUGGuGGaCCUGuAGGa -3'
miRNA:   3'- -GGuCAU------CCUGGACCuCCaGGACcUCC- -5'
31669 3' -56.8 NC_006883.1 + 27548 0.66 0.948365
Target:  5'- aCCAccuGGACCUGGAGGaccaucuccaCCUGuAGGa -3'
miRNA:   3'- -GGUcauCCUGGACCUCCa---------GGACcUCC- -5'
31669 3' -56.8 NC_006883.1 + 112428 0.67 0.930478
Target:  5'- --cGUAGGACCUaaaGGuGGUUCUGGuGc -3'
miRNA:   3'- gguCAUCCUGGA---CCuCCAGGACCuCc -5'
31669 3' -56.8 NC_006883.1 + 22048 0.67 0.92547
Target:  5'- aCCAGUuGGACCUGuAGGaccgUCUGGAc- -3'
miRNA:   3'- -GGUCAuCCUGGACcUCCa---GGACCUcc -5'
31669 3' -56.8 NC_006883.1 + 26560 0.68 0.914804
Target:  5'- uCCAGgAGGACCUGcuGGaCCUGuAGGa -3'
miRNA:   3'- -GGUCaUCCUGGACcuCCaGGACcUCC- -5'
31669 3' -56.8 NC_006883.1 + 28570 0.68 0.897202
Target:  5'- aCCuGaAGuuCCUGGuGGaCCUGGAGGa -3'
miRNA:   3'- -GGuCaUCcuGGACCuCCaGGACCUCC- -5'
31669 3' -56.8 NC_006883.1 + 23925 0.69 0.884421
Target:  5'- aCCAGUuGGACCUGuAGGaCCUGcuGGa -3'
miRNA:   3'- -GGUCAuCCUGGACcUCCaGGACcuCC- -5'
31669 3' -56.8 NC_006883.1 + 26988 0.69 0.884421
Target:  5'- aCCAGgAGGACCUGGAGaaCCaGcAGGa -3'
miRNA:   3'- -GGUCaUCCUGGACCUCcaGGaCcUCC- -5'
31669 3' -56.8 NC_006883.1 + 26803 0.69 0.849016
Target:  5'- aCCAGUuGGACCUGGuGGaCCaGcAGGa -3'
miRNA:   3'- -GGUCAuCCUGGACCuCCaGGaCcUCC- -5'
31669 3' -56.8 NC_006883.1 + 27503 0.7 0.84138
Target:  5'- aCCuGUAGGACCUGcuGGaCCUGuAGGa -3'
miRNA:   3'- -GGuCAUCCUGGACcuCCaGGACcUCC- -5'
31669 3' -56.8 NC_006883.1 + 23698 0.71 0.792188
Target:  5'- aCCAGauGGACCUGGAGGaCCaGcAGGa -3'
miRNA:   3'- -GGUCauCCUGGACCUCCaGGaCcUCC- -5'
31669 3' -56.8 NC_006883.1 + 21976 0.71 0.792188
Target:  5'- aCCAGgAGGACCUGcAGGaCCaGGAGa -3'
miRNA:   3'- -GGUCaUCCUGGACcUCCaGGaCCUCc -5'
31669 3' -56.8 NC_006883.1 + 23401 0.72 0.747553
Target:  5'- uCCAGUuGGACCUGuGGGaCCUGuGGGa -3'
miRNA:   3'- -GGUCAuCCUGGACcUCCaGGACcUCC- -5'
31669 3' -56.8 NC_006883.1 + 23305 0.73 0.69106
Target:  5'- aCCAGUuGGACCaccgauaccUGGAGGaCCUuGAGGa -3'
miRNA:   3'- -GGUCAuCCUGG---------ACCUCCaGGAcCUCC- -5'
31669 3' -56.8 NC_006883.1 + 23341 0.73 0.69106
Target:  5'- aCCAGUuGGACCUGGAgaaccagcaGGaCCUuGAGGa -3'
miRNA:   3'- -GGUCAuCCUGGACCU---------CCaGGAcCUCC- -5'
31669 3' -56.8 NC_006883.1 + 27755 0.73 0.681443
Target:  5'- aCCAGUuGGACCUGuGGgaccaguuGGUCCUGuGGGa -3'
miRNA:   3'- -GGUCAuCCUGGAC-CU--------CCAGGACcUCC- -5'
31669 3' -56.8 NC_006883.1 + 26686 0.73 0.662109
Target:  5'- aCCAGUuccaccaccuGGACCUGGAGGaccgUCUGGAc- -3'
miRNA:   3'- -GGUCAu---------CCUGGACCUCCa---GGACCUcc -5'
31669 3' -56.8 NC_006883.1 + 26713 0.73 0.642686
Target:  5'- uCCAGgAGGACCUGcuGGaCCUGGAGu -3'
miRNA:   3'- -GGUCaUCCUGGACcuCCaGGACCUCc -5'
31669 3' -56.8 NC_006883.1 + 28297 0.73 0.642686
Target:  5'- aCCAGUAGGACCaguUGGAccaguuccgccuGGaccaguuggaCCUGGAGGa -3'
miRNA:   3'- -GGUCAUCCUGG---ACCU------------CCa---------GGACCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.