Results 41 - 48 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31669 | 5' | -50.6 | NC_006883.1 | + | 222954 | 0.76 | 0.819432 |
Target: 5'- uUCCAccagCAGGACCAgCAGGACCaGGAg -3' miRNA: 3'- gAGGUa---GUCUUGGUaGUCUUGGaCCU- -5' |
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31669 | 5' | -50.6 | NC_006883.1 | + | 28184 | 0.77 | 0.774112 |
Target: 5'- uUCCGUCAGcACCAgCAGGACCaguUGGAc -3' miRNA: 3'- gAGGUAGUCuUGGUaGUCUUGG---ACCU- -5' |
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31669 | 5' | -50.6 | NC_006883.1 | + | 223079 | 0.8 | 0.602908 |
Target: 5'- -aCCAgCAGGACCAggAGGACCUGGAg -3' miRNA: 3'- gaGGUaGUCUUGGUagUCUUGGACCU- -5' |
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31669 | 5' | -50.6 | NC_006883.1 | + | 27611 | 0.81 | 0.582392 |
Target: 5'- -aCCAUCAGcACCAUCauuuccaggAGGACCUGGAg -3' miRNA: 3'- gaGGUAGUCuUGGUAG---------UCUUGGACCU- -5' |
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31669 | 5' | -50.6 | NC_006883.1 | + | 23185 | 0.81 | 0.572185 |
Target: 5'- -aCCAUCAGGACCAgCAGGuccaguuaaACCUGGAg -3' miRNA: 3'- gaGGUAGUCUUGGUaGUCU---------UGGACCU- -5' |
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31669 | 5' | -50.6 | NC_006883.1 | + | 112184 | 0.83 | 0.482981 |
Target: 5'- cCUCCAUCuuGACCAUCAuuACCUGGAg -3' miRNA: 3'- -GAGGUAGucUUGGUAGUcuUGGACCU- -5' |
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31669 | 5' | -50.6 | NC_006883.1 | + | 27684 | 0.84 | 0.40969 |
Target: 5'- uUCCAUCAGcACCAUCauuuccaggAGGACCUGGAg -3' miRNA: 3'- gAGGUAGUCuUGGUAG---------UCUUGGACCU- -5' |
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31669 | 5' | -50.6 | NC_006883.1 | + | 28431 | 1.1 | 0.012926 |
Target: 5'- cCUCCAUCAGAACCAUCAGAACCUGGAg -3' miRNA: 3'- -GAGGUAGUCUUGGUAGUCUUGGACCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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