Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31669 | 5' | -50.6 | NC_006883.1 | + | 220286 | 0.7 | 0.976562 |
Target: 5'- uUUCAguauaAGAACCAUUAGAACCUGc- -3' miRNA: 3'- gAGGUag---UCUUGGUAGUCUUGGACcu -5' |
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31669 | 5' | -50.6 | NC_006883.1 | + | 22021 | 0.7 | 0.976562 |
Target: 5'- -aCCcgUAGGACCAgCAGGACCaguUGGAc -3' miRNA: 3'- gaGGuaGUCUUGGUaGUCUUGG---ACCU- -5' |
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31669 | 5' | -50.6 | NC_006883.1 | + | 28274 | 0.7 | 0.976562 |
Target: 5'- uUCCGcCuGGACCAguuGGACCUGGAg -3' miRNA: 3'- gAGGUaGuCUUGGUaguCUUGGACCU- -5' |
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31669 | 5' | -50.6 | NC_006883.1 | + | 2969 | 0.71 | 0.971237 |
Target: 5'- aCUCCAUUugAGAcCUAUCAGGcauACUUGGAa -3' miRNA: 3'- -GAGGUAG--UCUuGGUAGUCU---UGGACCU- -5' |
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31669 | 5' | -50.6 | NC_006883.1 | + | 26812 | 0.71 | 0.968272 |
Target: 5'- -aCCAgCAGGACCAguuGGACCUGGu -3' miRNA: 3'- gaGGUaGUCUUGGUaguCUUGGACCu -5' |
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31669 | 5' | -50.6 | NC_006883.1 | + | 23221 | 0.71 | 0.965095 |
Target: 5'- -aCCAgCAGGACCAggAGGACCaGGAg -3' miRNA: 3'- gaGGUaGUCUUGGUagUCUUGGaCCU- -5' |
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31669 | 5' | -50.6 | NC_006883.1 | + | 28112 | 0.71 | 0.961702 |
Target: 5'- gUCCugUAGGACCAguuGGACCUGGAg -3' miRNA: 3'- gAGGuaGUCUUGGUaguCUUGGACCU- -5' |
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31669 | 5' | -50.6 | NC_006883.1 | + | 121904 | 0.71 | 0.958086 |
Target: 5'- -gUUAUCAGAACUAUCuacaacguagcAGAGCCUGGu -3' miRNA: 3'- gaGGUAGUCUUGGUAG-----------UCUUGGACCu -5' |
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31669 | 5' | -50.6 | NC_006883.1 | + | 28375 | 0.72 | 0.954243 |
Target: 5'- -aCCGUCAGcACCAggAGGuCCUGGAg -3' miRNA: 3'- gaGGUAGUCuUGGUagUCUuGGACCU- -5' |
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31669 | 5' | -50.6 | NC_006883.1 | + | 28348 | 0.72 | 0.950169 |
Target: 5'- -aCCAgCAGGACCAguUCcgccuGGACCUGGAg -3' miRNA: 3'- gaGGUaGUCUUGGU--AGu----CUUGGACCU- -5' |
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31669 | 5' | -50.6 | NC_006883.1 | + | 23735 | 0.72 | 0.950169 |
Target: 5'- aUCCAggAGGACCugcuGGACCUGGAg -3' miRNA: 3'- gAGGUagUCUUGGuaguCUUGGACCU- -5' |
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31669 | 5' | -50.6 | NC_006883.1 | + | 26993 | 0.72 | 0.941313 |
Target: 5'- -----cCAGAACCAggAGGACCUGGAg -3' miRNA: 3'- gagguaGUCUUGGUagUCUUGGACCU- -5' |
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31669 | 5' | -50.6 | NC_006883.1 | + | 22198 | 0.73 | 0.931497 |
Target: 5'- -aCCAgCAGGACCAggaccaccacUAGGACCUGGAg -3' miRNA: 3'- gaGGUaGUCUUGGUa---------GUCUUGGACCU- -5' |
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31669 | 5' | -50.6 | NC_006883.1 | + | 27766 | 0.73 | 0.931497 |
Target: 5'- gCUCCAgCAGGACCAguuGGACCUGuGGg -3' miRNA: 3'- -GAGGUaGUCUUGGUaguCUUGGAC-CU- -5' |
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31669 | 5' | -50.6 | NC_006883.1 | + | 26724 | 0.73 | 0.914954 |
Target: 5'- gCUCCAUCauuuccaggAGGACCugcuGGACCUGGAg -3' miRNA: 3'- -GAGGUAG---------UCUUGGuaguCUUGGACCU- -5' |
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31669 | 5' | -50.6 | NC_006883.1 | + | 22225 | 0.75 | 0.852633 |
Target: 5'- -aCCAcuuGGACCAUCuGGACCUGGAg -3' miRNA: 3'- gaGGUaguCUUGGUAGuCUUGGACCU- -5' |
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31669 | 5' | -50.6 | NC_006883.1 | + | 22123 | 0.75 | 0.83641 |
Target: 5'- -aCCAgCAGGACCAUCuccaccacucGGACCUGGAg -3' miRNA: 3'- gaGGUaGUCUUGGUAGu---------CUUGGACCU- -5' |
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31669 | 5' | -50.6 | NC_006883.1 | + | 28483 | 0.76 | 0.828011 |
Target: 5'- -aCCAggAGGACCAUCuccaccaguAGGACCUGGAg -3' miRNA: 3'- gaGGUagUCUUGGUAG---------UCUUGGACCU- -5' |
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31669 | 5' | -50.6 | NC_006883.1 | + | 23251 | 0.76 | 0.819432 |
Target: 5'- -aCCAgCAGGACCAguuGGACCUGGAg -3' miRNA: 3'- gaGGUaGUCUUGGUaguCUUGGACCU- -5' |
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31669 | 5' | -50.6 | NC_006883.1 | + | 222954 | 0.76 | 0.819432 |
Target: 5'- uUCCAccagCAGGACCAgCAGGACCaGGAg -3' miRNA: 3'- gAGGUa---GUCUUGGUaGUCUUGGaCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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