miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31669 5' -50.6 NC_006883.1 + 26571 0.66 0.998607
Target:  5'- gCUCCAUCAuuuCCAggAGGACCUgcuGGAc -3'
miRNA:   3'- -GAGGUAGUcuuGGUagUCUUGGA---CCU- -5'
31669 5' -50.6 NC_006883.1 + 26636 0.68 0.995503
Target:  5'- uUCCAccugUGGGACCAgCAGGACCaguUGGAc -3'
miRNA:   3'- gAGGUa---GUCUUGGUaGUCUUGG---ACCU- -5'
31669 5' -50.6 NC_006883.1 + 26724 0.73 0.914954
Target:  5'- gCUCCAUCauuuccaggAGGACCugcuGGACCUGGAg -3'
miRNA:   3'- -GAGGUAG---------UCUUGGuaguCUUGGACCU- -5'
31669 5' -50.6 NC_006883.1 + 26812 0.71 0.968272
Target:  5'- -aCCAgCAGGACCAguuGGACCUGGu -3'
miRNA:   3'- gaGGUaGUCUUGGUaguCUUGGACCu -5'
31669 5' -50.6 NC_006883.1 + 26993 0.72 0.941313
Target:  5'- -----cCAGAACCAggAGGACCUGGAg -3'
miRNA:   3'- gagguaGUCUUGGUagUCUUGGACCU- -5'
31669 5' -50.6 NC_006883.1 + 27557 0.68 0.993046
Target:  5'- -aCCAcCuGGACCAcCuGGACCUGGAg -3'
miRNA:   3'- gaGGUaGuCUUGGUaGuCUUGGACCU- -5'
31669 5' -50.6 NC_006883.1 + 27611 0.81 0.582392
Target:  5'- -aCCAUCAGcACCAUCauuuccaggAGGACCUGGAg -3'
miRNA:   3'- gaGGUAGUCuUGGUAG---------UCUUGGACCU- -5'
31669 5' -50.6 NC_006883.1 + 27684 0.84 0.40969
Target:  5'- uUCCAUCAGcACCAUCauuuccaggAGGACCUGGAg -3'
miRNA:   3'- gAGGUAGUCuUGGUAG---------UCUUGGACCU- -5'
31669 5' -50.6 NC_006883.1 + 27766 0.73 0.931497
Target:  5'- gCUCCAgCAGGACCAguuGGACCUGuGGg -3'
miRNA:   3'- -GAGGUaGUCUUGGUaguCUUGGAC-CU- -5'
31669 5' -50.6 NC_006883.1 + 28112 0.71 0.961702
Target:  5'- gUCCugUAGGACCAguuGGACCUGGAg -3'
miRNA:   3'- gAGGuaGUCUUGGUaguCUUGGACCU- -5'
31669 5' -50.6 NC_006883.1 + 28184 0.77 0.774112
Target:  5'- uUCCGUCAGcACCAgCAGGACCaguUGGAc -3'
miRNA:   3'- gAGGUAGUCuUGGUaGUCUUGG---ACCU- -5'
31669 5' -50.6 NC_006883.1 + 28242 0.69 0.984989
Target:  5'- uCUCCAccagUAGGACCAgCAGGACCagucGGAc -3'
miRNA:   3'- -GAGGUa---GUCUUGGUaGUCUUGGa---CCU- -5'
31669 5' -50.6 NC_006883.1 + 28274 0.7 0.976562
Target:  5'- uUCCGcCuGGACCAguuGGACCUGGAg -3'
miRNA:   3'- gAGGUaGuCUUGGUaguCUUGGACCU- -5'
31669 5' -50.6 NC_006883.1 + 28306 0.66 0.999047
Target:  5'- -aCCAUCAucACCAgUAGGACCaguUGGAc -3'
miRNA:   3'- gaGGUAGUcuUGGUaGUCUUGG---ACCU- -5'
31669 5' -50.6 NC_006883.1 + 28348 0.72 0.950169
Target:  5'- -aCCAgCAGGACCAguUCcgccuGGACCUGGAg -3'
miRNA:   3'- gaGGUaGUCUUGGU--AGu----CUUGGACCU- -5'
31669 5' -50.6 NC_006883.1 + 28375 0.72 0.954243
Target:  5'- -aCCGUCAGcACCAggAGGuCCUGGAg -3'
miRNA:   3'- gaGGUAGUCuUGGUagUCUuGGACCU- -5'
31669 5' -50.6 NC_006883.1 + 28431 1.1 0.012926
Target:  5'- cCUCCAUCAGAACCAUCAGAACCUGGAg -3'
miRNA:   3'- -GAGGUAGUCUUGGUAGUCUUGGACCU- -5'
31669 5' -50.6 NC_006883.1 + 28483 0.76 0.828011
Target:  5'- -aCCAggAGGACCAUCuccaccaguAGGACCUGGAg -3'
miRNA:   3'- gaGGUagUCUUGGUAG---------UCUUGGACCU- -5'
31669 5' -50.6 NC_006883.1 + 36107 0.66 0.999119
Target:  5'- -gCUAUCGGAuuaccuggcacaguaACCAUCAGAGaagaUGGAa -3'
miRNA:   3'- gaGGUAGUCU---------------UGGUAGUCUUgg--ACCU- -5'
31669 5' -50.6 NC_006883.1 + 86134 0.67 0.997633
Target:  5'- uCUCUG-CAGGACCAacaaccaaAGAAUCUGGAg -3'
miRNA:   3'- -GAGGUaGUCUUGGUag------UCUUGGACCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.