Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31669 | 5' | -50.6 | NC_006883.1 | + | 121904 | 0.71 | 0.958086 |
Target: 5'- -gUUAUCAGAACUAUCuacaacguagcAGAGCCUGGu -3' miRNA: 3'- gaGGUAGUCUUGGUAG-----------UCUUGGACCu -5' |
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31669 | 5' | -50.6 | NC_006883.1 | + | 28112 | 0.71 | 0.961702 |
Target: 5'- gUCCugUAGGACCAguuGGACCUGGAg -3' miRNA: 3'- gAGGuaGUCUUGGUaguCUUGGACCU- -5' |
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31669 | 5' | -50.6 | NC_006883.1 | + | 23221 | 0.71 | 0.965095 |
Target: 5'- -aCCAgCAGGACCAggAGGACCaGGAg -3' miRNA: 3'- gaGGUaGUCUUGGUagUCUUGGaCCU- -5' |
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31669 | 5' | -50.6 | NC_006883.1 | + | 26812 | 0.71 | 0.968272 |
Target: 5'- -aCCAgCAGGACCAguuGGACCUGGu -3' miRNA: 3'- gaGGUaGUCUUGGUaguCUUGGACCu -5' |
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31669 | 5' | -50.6 | NC_006883.1 | + | 2969 | 0.71 | 0.971237 |
Target: 5'- aCUCCAUUugAGAcCUAUCAGGcauACUUGGAa -3' miRNA: 3'- -GAGGUAG--UCUuGGUAGUCU---UGGACCU- -5' |
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31669 | 5' | -50.6 | NC_006883.1 | + | 22021 | 0.7 | 0.976562 |
Target: 5'- -aCCcgUAGGACCAgCAGGACCaguUGGAc -3' miRNA: 3'- gaGGuaGUCUUGGUaGUCUUGG---ACCU- -5' |
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31669 | 5' | -50.6 | NC_006883.1 | + | 28274 | 0.7 | 0.976562 |
Target: 5'- uUCCGcCuGGACCAguuGGACCUGGAg -3' miRNA: 3'- gAGGUaGuCUUGGUaguCUUGGACCU- -5' |
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31669 | 5' | -50.6 | NC_006883.1 | + | 220286 | 0.7 | 0.976562 |
Target: 5'- uUUCAguauaAGAACCAUUAGAACCUGc- -3' miRNA: 3'- gAGGUag---UCUUGGUAGUCUUGGACcu -5' |
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31669 | 5' | -50.6 | NC_006883.1 | + | 22087 | 0.7 | 0.978935 |
Target: 5'- -aCCAcuuGGACCAggAGGACCUGGAg -3' miRNA: 3'- gaGGUaguCUUGGUagUCUUGGACCU- -5' |
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31669 | 5' | -50.6 | NC_006883.1 | + | 23349 | 0.7 | 0.981125 |
Target: 5'- -cCUA-CAGGACCAguuGGACCUGGAg -3' miRNA: 3'- gaGGUaGUCUUGGUaguCUUGGACCU- -5' |
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31669 | 5' | -50.6 | NC_006883.1 | + | 28242 | 0.69 | 0.984989 |
Target: 5'- uCUCCAccagUAGGACCAgCAGGACCagucGGAc -3' miRNA: 3'- -GAGGUa---GUCUUGGUaGUCUUGGa---CCU- -5' |
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31669 | 5' | -50.6 | NC_006883.1 | + | 21788 | 0.69 | 0.986678 |
Target: 5'- -gCCAcCuGGACCAgaAGGACCUGGAg -3' miRNA: 3'- gaGGUaGuCUUGGUagUCUUGGACCU- -5' |
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31669 | 5' | -50.6 | NC_006883.1 | + | 220943 | 0.69 | 0.991352 |
Target: 5'- cCUUCAUCAGAuuuccaccaaagauuACCAUCAGuaggauuACUUGGu -3' miRNA: 3'- -GAGGUAGUCU---------------UGGUAGUCu------UGGACCu -5' |
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31669 | 5' | -50.6 | NC_006883.1 | + | 27557 | 0.68 | 0.993046 |
Target: 5'- -aCCAcCuGGACCAcCuGGACCUGGAg -3' miRNA: 3'- gaGGUaGuCUUGGUaGuCUUGGACCU- -5' |
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31669 | 5' | -50.6 | NC_006883.1 | + | 25022 | 0.68 | 0.994779 |
Target: 5'- cCUCCuguuGGACCuggAGGACCUGGAg -3' miRNA: 3'- -GAGGuaguCUUGGuagUCUUGGACCU- -5' |
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31669 | 5' | -50.6 | NC_006883.1 | + | 26636 | 0.68 | 0.995503 |
Target: 5'- uUCCAccugUGGGACCAgCAGGACCaguUGGAc -3' miRNA: 3'- gAGGUa---GUCUUGGUaGUCUUGG---ACCU- -5' |
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31669 | 5' | -50.6 | NC_006883.1 | + | 22252 | 0.67 | 0.996708 |
Target: 5'- -aCCAgCAGAuCCAgCAGGACCaGGAg -3' miRNA: 3'- gaGGUaGUCUuGGUaGUCUUGGaCCU- -5' |
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31669 | 5' | -50.6 | NC_006883.1 | + | 86134 | 0.67 | 0.997633 |
Target: 5'- uCUCUG-CAGGACCAacaaccaaAGAAUCUGGAg -3' miRNA: 3'- -GAGGUaGUCUUGGUag------UCUUGGACCU- -5' |
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31669 | 5' | -50.6 | NC_006883.1 | + | 26571 | 0.66 | 0.998607 |
Target: 5'- gCUCCAUCAuuuCCAggAGGACCUgcuGGAc -3' miRNA: 3'- -GAGGUAGUcuuGGUagUCUUGGA---CCU- -5' |
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31669 | 5' | -50.6 | NC_006883.1 | + | 23863 | 0.66 | 0.998607 |
Target: 5'- -cCCAUguGAACUAUCAGcauCUUGGu -3' miRNA: 3'- gaGGUAguCUUGGUAGUCuu-GGACCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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