miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31669 5' -50.6 NC_006883.1 + 28431 1.1 0.012926
Target:  5'- cCUCCAUCAGAACCAUCAGAACCUGGAg -3'
miRNA:   3'- -GAGGUAGUCUUGGUAGUCUUGGACCU- -5'
31669 5' -50.6 NC_006883.1 + 27684 0.84 0.40969
Target:  5'- uUCCAUCAGcACCAUCauuuccaggAGGACCUGGAg -3'
miRNA:   3'- gAGGUAGUCuUGGUAG---------UCUUGGACCU- -5'
31669 5' -50.6 NC_006883.1 + 112184 0.83 0.482981
Target:  5'- cCUCCAUCuuGACCAUCAuuACCUGGAg -3'
miRNA:   3'- -GAGGUAGucUUGGUAGUcuUGGACCU- -5'
31669 5' -50.6 NC_006883.1 + 23185 0.81 0.572185
Target:  5'- -aCCAUCAGGACCAgCAGGuccaguuaaACCUGGAg -3'
miRNA:   3'- gaGGUAGUCUUGGUaGUCU---------UGGACCU- -5'
31669 5' -50.6 NC_006883.1 + 27611 0.81 0.582392
Target:  5'- -aCCAUCAGcACCAUCauuuccaggAGGACCUGGAg -3'
miRNA:   3'- gaGGUAGUCuUGGUAG---------UCUUGGACCU- -5'
31669 5' -50.6 NC_006883.1 + 223079 0.8 0.602908
Target:  5'- -aCCAgCAGGACCAggAGGACCUGGAg -3'
miRNA:   3'- gaGGUaGUCUUGGUagUCUUGGACCU- -5'
31669 5' -50.6 NC_006883.1 + 28184 0.77 0.774112
Target:  5'- uUCCGUCAGcACCAgCAGGACCaguUGGAc -3'
miRNA:   3'- gAGGUAGUCuUGGUaGUCUUGG---ACCU- -5'
31669 5' -50.6 NC_006883.1 + 23149 0.76 0.819432
Target:  5'- -aCCAgCAGGACCAguuGGACCUGGAg -3'
miRNA:   3'- gaGGUaGUCUUGGUaguCUUGGACCU- -5'
31669 5' -50.6 NC_006883.1 + 23251 0.76 0.819432
Target:  5'- -aCCAgCAGGACCAguuGGACCUGGAg -3'
miRNA:   3'- gaGGUaGUCUUGGUaguCUUGGACCU- -5'
31669 5' -50.6 NC_006883.1 + 222954 0.76 0.819432
Target:  5'- uUCCAccagCAGGACCAgCAGGACCaGGAg -3'
miRNA:   3'- gAGGUa---GUCUUGGUaGUCUUGGaCCU- -5'
31669 5' -50.6 NC_006883.1 + 28483 0.76 0.828011
Target:  5'- -aCCAggAGGACCAUCuccaccaguAGGACCUGGAg -3'
miRNA:   3'- gaGGUagUCUUGGUAG---------UCUUGGACCU- -5'
31669 5' -50.6 NC_006883.1 + 22123 0.75 0.83641
Target:  5'- -aCCAgCAGGACCAUCuccaccacucGGACCUGGAg -3'
miRNA:   3'- gaGGUaGUCUUGGUAGu---------CUUGGACCU- -5'
31669 5' -50.6 NC_006883.1 + 22225 0.75 0.852633
Target:  5'- -aCCAcuuGGACCAUCuGGACCUGGAg -3'
miRNA:   3'- gaGGUaguCUUGGUAGuCUUGGACCU- -5'
31669 5' -50.6 NC_006883.1 + 26724 0.73 0.914954
Target:  5'- gCUCCAUCauuuccaggAGGACCugcuGGACCUGGAg -3'
miRNA:   3'- -GAGGUAG---------UCUUGGuaguCUUGGACCU- -5'
31669 5' -50.6 NC_006883.1 + 22198 0.73 0.931497
Target:  5'- -aCCAgCAGGACCAggaccaccacUAGGACCUGGAg -3'
miRNA:   3'- gaGGUaGUCUUGGUa---------GUCUUGGACCU- -5'
31669 5' -50.6 NC_006883.1 + 27766 0.73 0.931497
Target:  5'- gCUCCAgCAGGACCAguuGGACCUGuGGg -3'
miRNA:   3'- -GAGGUaGUCUUGGUaguCUUGGAC-CU- -5'
31669 5' -50.6 NC_006883.1 + 26993 0.72 0.941313
Target:  5'- -----cCAGAACCAggAGGACCUGGAg -3'
miRNA:   3'- gagguaGUCUUGGUagUCUUGGACCU- -5'
31669 5' -50.6 NC_006883.1 + 28348 0.72 0.950169
Target:  5'- -aCCAgCAGGACCAguUCcgccuGGACCUGGAg -3'
miRNA:   3'- gaGGUaGUCUUGGU--AGu----CUUGGACCU- -5'
31669 5' -50.6 NC_006883.1 + 23735 0.72 0.950169
Target:  5'- aUCCAggAGGACCugcuGGACCUGGAg -3'
miRNA:   3'- gAGGUagUCUUGGuaguCUUGGACCU- -5'
31669 5' -50.6 NC_006883.1 + 28375 0.72 0.954243
Target:  5'- -aCCGUCAGcACCAggAGGuCCUGGAg -3'
miRNA:   3'- gaGGUAGUCuUGGUagUCUuGGACCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.