miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31669 5' -50.6 NC_006883.1 + 2969 0.71 0.971237
Target:  5'- aCUCCAUUugAGAcCUAUCAGGcauACUUGGAa -3'
miRNA:   3'- -GAGGUAG--UCUuGGUAGUCU---UGGACCU- -5'
31669 5' -50.6 NC_006883.1 + 21788 0.69 0.986678
Target:  5'- -gCCAcCuGGACCAgaAGGACCUGGAg -3'
miRNA:   3'- gaGGUaGuCUUGGUagUCUUGGACCU- -5'
31669 5' -50.6 NC_006883.1 + 21815 0.66 0.999362
Target:  5'- -aCCuUgAGGGCCAgCAGGACCaGGAc -3'
miRNA:   3'- gaGGuAgUCUUGGUaGUCUUGGaCCU- -5'
31669 5' -50.6 NC_006883.1 + 21987 0.66 0.999362
Target:  5'- cCUCCAcuuGGACCAggaggaccugCAGGACCaGGAg -3'
miRNA:   3'- -GAGGUaguCUUGGUa---------GUCUUGGaCCU- -5'
31669 5' -50.6 NC_006883.1 + 22021 0.7 0.976562
Target:  5'- -aCCcgUAGGACCAgCAGGACCaguUGGAc -3'
miRNA:   3'- gaGGuaGUCUUGGUaGUCUUGG---ACCU- -5'
31669 5' -50.6 NC_006883.1 + 22087 0.7 0.978935
Target:  5'- -aCCAcuuGGACCAggAGGACCUGGAg -3'
miRNA:   3'- gaGGUaguCUUGGUagUCUUGGACCU- -5'
31669 5' -50.6 NC_006883.1 + 22123 0.75 0.83641
Target:  5'- -aCCAgCAGGACCAUCuccaccacucGGACCUGGAg -3'
miRNA:   3'- gaGGUaGUCUUGGUAGu---------CUUGGACCU- -5'
31669 5' -50.6 NC_006883.1 + 22198 0.73 0.931497
Target:  5'- -aCCAgCAGGACCAggaccaccacUAGGACCUGGAg -3'
miRNA:   3'- gaGGUaGUCUUGGUa---------GUCUUGGACCU- -5'
31669 5' -50.6 NC_006883.1 + 22225 0.75 0.852633
Target:  5'- -aCCAcuuGGACCAUCuGGACCUGGAg -3'
miRNA:   3'- gaGGUaguCUUGGUAGuCUUGGACCU- -5'
31669 5' -50.6 NC_006883.1 + 22252 0.67 0.996708
Target:  5'- -aCCAgCAGAuCCAgCAGGACCaGGAg -3'
miRNA:   3'- gaGGUaGUCUuGGUaGUCUUGGaCCU- -5'
31669 5' -50.6 NC_006883.1 + 23149 0.76 0.819432
Target:  5'- -aCCAgCAGGACCAguuGGACCUGGAg -3'
miRNA:   3'- gaGGUaGUCUUGGUaguCUUGGACCU- -5'
31669 5' -50.6 NC_006883.1 + 23185 0.81 0.572185
Target:  5'- -aCCAUCAGGACCAgCAGGuccaguuaaACCUGGAg -3'
miRNA:   3'- gaGGUAGUCUUGGUaGUCU---------UGGACCU- -5'
31669 5' -50.6 NC_006883.1 + 23221 0.71 0.965095
Target:  5'- -aCCAgCAGGACCAggAGGACCaGGAg -3'
miRNA:   3'- gaGGUaGUCUUGGUagUCUUGGaCCU- -5'
31669 5' -50.6 NC_006883.1 + 23251 0.76 0.819432
Target:  5'- -aCCAgCAGGACCAguuGGACCUGGAg -3'
miRNA:   3'- gaGGUaGUCUUGGUaguCUUGGACCU- -5'
31669 5' -50.6 NC_006883.1 + 23349 0.7 0.981125
Target:  5'- -cCUA-CAGGACCAguuGGACCUGGAg -3'
miRNA:   3'- gaGGUaGUCUUGGUaguCUUGGACCU- -5'
31669 5' -50.6 NC_006883.1 + 23735 0.72 0.950169
Target:  5'- aUCCAggAGGACCugcuGGACCUGGAg -3'
miRNA:   3'- gAGGUagUCUUGGuaguCUUGGACCU- -5'
31669 5' -50.6 NC_006883.1 + 23863 0.66 0.998607
Target:  5'- -cCCAUguGAACUAUCAGcauCUUGGu -3'
miRNA:   3'- gaGGUAguCUUGGUAGUCuu-GGACCu -5'
31669 5' -50.6 NC_006883.1 + 23952 0.66 0.999362
Target:  5'- -aCCAgCAGAACCAgUCGG-ACCaguUGGAc -3'
miRNA:   3'- gaGGUaGUCUUGGU-AGUCuUGG---ACCU- -5'
31669 5' -50.6 NC_006883.1 + 24957 0.66 0.999362
Target:  5'- -aCCAcuuGGACCugUAGGACCUGGAg -3'
miRNA:   3'- gaGGUaguCUUGGuaGUCUUGGACCU- -5'
31669 5' -50.6 NC_006883.1 + 25022 0.68 0.994779
Target:  5'- cCUCCuguuGGACCuggAGGACCUGGAg -3'
miRNA:   3'- -GAGGuaguCUUGGuagUCUUGGACCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.