miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31669 5' -50.6 NC_006883.1 + 223079 0.8 0.602908
Target:  5'- -aCCAgCAGGACCAggAGGACCUGGAg -3'
miRNA:   3'- gaGGUaGUCUUGGUagUCUUGGACCU- -5'
31669 5' -50.6 NC_006883.1 + 222986 0.66 0.999218
Target:  5'- -aCCAgCAGGACCAgguGAACCUuguGGAc -3'
miRNA:   3'- gaGGUaGUCUUGGUaguCUUGGA---CCU- -5'
31669 5' -50.6 NC_006883.1 + 222954 0.76 0.819432
Target:  5'- uUCCAccagCAGGACCAgCAGGACCaGGAg -3'
miRNA:   3'- gAGGUa---GUCUUGGUaGUCUUGGaCCU- -5'
31669 5' -50.6 NC_006883.1 + 220943 0.69 0.991352
Target:  5'- cCUUCAUCAGAuuuccaccaaagauuACCAUCAGuaggauuACUUGGu -3'
miRNA:   3'- -GAGGUAGUCU---------------UGGUAGUCu------UGGACCu -5'
31669 5' -50.6 NC_006883.1 + 220286 0.7 0.976562
Target:  5'- uUUCAguauaAGAACCAUUAGAACCUGc- -3'
miRNA:   3'- gAGGUag---UCUUGGUAGUCUUGGACcu -5'
31669 5' -50.6 NC_006883.1 + 187411 0.66 0.999047
Target:  5'- --aCAUCAGGaacACCAUUAGGACUgucuauaucuUGGAu -3'
miRNA:   3'- gagGUAGUCU---UGGUAGUCUUGG----------ACCU- -5'
31669 5' -50.6 NC_006883.1 + 121904 0.71 0.958086
Target:  5'- -gUUAUCAGAACUAUCuacaacguagcAGAGCCUGGu -3'
miRNA:   3'- gaGGUAGUCUUGGUAG-----------UCUUGGACCu -5'
31669 5' -50.6 NC_006883.1 + 112184 0.83 0.482981
Target:  5'- cCUCCAUCuuGACCAUCAuuACCUGGAg -3'
miRNA:   3'- -GAGGUAGucUUGGUAGUcuUGGACCU- -5'
31669 5' -50.6 NC_006883.1 + 86134 0.67 0.997633
Target:  5'- uCUCUG-CAGGACCAacaaccaaAGAAUCUGGAg -3'
miRNA:   3'- -GAGGUaGUCUUGGUag------UCUUGGACCU- -5'
31669 5' -50.6 NC_006883.1 + 36107 0.66 0.999119
Target:  5'- -gCUAUCGGAuuaccuggcacaguaACCAUCAGAGaagaUGGAa -3'
miRNA:   3'- gaGGUAGUCU---------------UGGUAGUCUUgg--ACCU- -5'
31669 5' -50.6 NC_006883.1 + 28483 0.76 0.828011
Target:  5'- -aCCAggAGGACCAUCuccaccaguAGGACCUGGAg -3'
miRNA:   3'- gaGGUagUCUUGGUAG---------UCUUGGACCU- -5'
31669 5' -50.6 NC_006883.1 + 28431 1.1 0.012926
Target:  5'- cCUCCAUCAGAACCAUCAGAACCUGGAg -3'
miRNA:   3'- -GAGGUAGUCUUGGUAGUCUUGGACCU- -5'
31669 5' -50.6 NC_006883.1 + 28375 0.72 0.954243
Target:  5'- -aCCGUCAGcACCAggAGGuCCUGGAg -3'
miRNA:   3'- gaGGUAGUCuUGGUagUCUuGGACCU- -5'
31669 5' -50.6 NC_006883.1 + 28348 0.72 0.950169
Target:  5'- -aCCAgCAGGACCAguUCcgccuGGACCUGGAg -3'
miRNA:   3'- gaGGUaGUCUUGGU--AGu----CUUGGACCU- -5'
31669 5' -50.6 NC_006883.1 + 28306 0.66 0.999047
Target:  5'- -aCCAUCAucACCAgUAGGACCaguUGGAc -3'
miRNA:   3'- gaGGUAGUcuUGGUaGUCUUGG---ACCU- -5'
31669 5' -50.6 NC_006883.1 + 28274 0.7 0.976562
Target:  5'- uUCCGcCuGGACCAguuGGACCUGGAg -3'
miRNA:   3'- gAGGUaGuCUUGGUaguCUUGGACCU- -5'
31669 5' -50.6 NC_006883.1 + 28242 0.69 0.984989
Target:  5'- uCUCCAccagUAGGACCAgCAGGACCagucGGAc -3'
miRNA:   3'- -GAGGUa---GUCUUGGUaGUCUUGGa---CCU- -5'
31669 5' -50.6 NC_006883.1 + 28184 0.77 0.774112
Target:  5'- uUCCGUCAGcACCAgCAGGACCaguUGGAc -3'
miRNA:   3'- gAGGUAGUCuUGGUaGUCUUGG---ACCU- -5'
31669 5' -50.6 NC_006883.1 + 28112 0.71 0.961702
Target:  5'- gUCCugUAGGACCAguuGGACCUGGAg -3'
miRNA:   3'- gAGGuaGUCUUGGUaguCUUGGACCU- -5'
31669 5' -50.6 NC_006883.1 + 27766 0.73 0.931497
Target:  5'- gCUCCAgCAGGACCAguuGGACCUGuGGg -3'
miRNA:   3'- -GAGGUaGUCUUGGUaguCUUGGAC-CU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.