miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31670 3' -56 NC_006883.1 + 28555 1.11 0.003934
Target:  5'- uGGACCUGGAGGACCACUUCCACCUGAa -3'
miRNA:   3'- -CCUGGACCUCCUGGUGAAGGUGGACU- -5'
31670 3' -56 NC_006883.1 + 27542 0.97 0.033066
Target:  5'- uGGACCUGGAGGACCAUcUCCACCUGu -3'
miRNA:   3'- -CCUGGACCUCCUGGUGaAGGUGGACu -5'
31670 3' -56 NC_006883.1 + 28405 0.93 0.055847
Target:  5'- aGGACCUGGAGGACCACUUCCcCCa-- -3'
miRNA:   3'- -CCUGGACCUCCUGGUGAAGGuGGacu -5'
31670 3' -56 NC_006883.1 + 25005 0.92 0.063594
Target:  5'- aGGACCUGGAGGACCGCUaggaCCACUUGGa -3'
miRNA:   3'- -CCUGGACCUCCUGGUGAa---GGUGGACU- -5'
31670 3' -56 NC_006883.1 + 28258 0.91 0.072374
Target:  5'- uGGACCUGGAGGACCAUcUCCACCa-- -3'
miRNA:   3'- -CCUGGACCUCCUGGUGaAGGUGGacu -5'
31670 3' -56 NC_006883.1 + 22099 0.88 0.111726
Target:  5'- cGGACCUGGAGGACCACUUggaCCaggaggACCUGGa -3'
miRNA:   3'- -CCUGGACCUCCUGGUGAA---GG------UGGACU- -5'
31670 3' -56 NC_006883.1 + 22237 0.87 0.136534
Target:  5'- aGGACCaGGAGGACCACUUggaCCAUCUGGa -3'
miRNA:   3'- -CCUGGaCCUCCUGGUGAA---GGUGGACU- -5'
31670 3' -56 NC_006883.1 + 27587 0.87 0.139276
Target:  5'- aGGACCUGGAGGACCuGCUggaccugugccaCCACCUGGa -3'
miRNA:   3'- -CCUGGACCUCCUGG-UGAa-----------GGUGGACU- -5'
31670 3' -56 NC_006883.1 + 22174 0.86 0.14708
Target:  5'- aGGACCUGGAGGACCACcaCUaggACCUGGa -3'
miRNA:   3'- -CCUGGACCUCCUGGUGaaGG---UGGACU- -5'
31670 3' -56 NC_006883.1 + 28450 0.85 0.166314
Target:  5'- aGGuCCUGGAGGACCACUUCCuCCa-- -3'
miRNA:   3'- -CCuGGACCUCCUGGUGAAGGuGGacu -5'
31670 3' -56 NC_006883.1 + 223064 0.84 0.192349
Target:  5'- aGGACCUGGAGGACCAacaggaCCACCaGAa -3'
miRNA:   3'- -CCUGGACCUCCUGGUgaa---GGUGGaCU- -5'
31670 3' -56 NC_006883.1 + 26671 0.84 0.20864
Target:  5'- uGGACCUGGAGGACCgucuggaccaguuggACcagUUCCACCUGu -3'
miRNA:   3'- -CCUGGACCUCCUGG---------------UG---AAGGUGGACu -5'
31670 3' -56 NC_006883.1 + 28486 0.83 0.227173
Target:  5'- uGGACCaGGAGGACCAUcUCCACCa-- -3'
miRNA:   3'- -CCUGGaCCUCCUGGUGaAGGUGGacu -5'
31670 3' -56 NC_006883.1 + 28318 0.83 0.227173
Target:  5'- aGGACCUGGAGGACCAUcaUCACCa-- -3'
miRNA:   3'- -CCUGGACCUCCUGGUGaaGGUGGacu -5'
31670 3' -56 NC_006883.1 + 28360 0.82 0.24938
Target:  5'- aGGuCCUGGAGGACCAgCaggaccagUUCCGCCUGGa -3'
miRNA:   3'- -CCuGGACCUCCUGGU-G--------AAGGUGGACU- -5'
31670 3' -56 NC_006883.1 + 27659 0.82 0.24938
Target:  5'- aGGACCUGGAGGACCuGCUgg-ACCUGGa -3'
miRNA:   3'- -CCUGGACCUCCUGG-UGAaggUGGACU- -5'
31670 3' -56 NC_006883.1 + 26698 0.82 0.261142
Target:  5'- uGGACCUGGAGuACCAgUUCCACCa-- -3'
miRNA:   3'- -CCUGGACCUCcUGGUgAAGGUGGacu -5'
31670 3' -56 NC_006883.1 + 28168 0.82 0.27335
Target:  5'- aGGACCaGuuGGACCAgUUCCACCUGAa -3'
miRNA:   3'- -CCUGGaCcuCCUGGUgAAGGUGGACU- -5'
31670 3' -56 NC_006883.1 + 23692 0.81 0.278361
Target:  5'- uGGACCUGGAGGACCAgcaggaccaggUCCACCa-- -3'
miRNA:   3'- -CCUGGACCUCCUGGUga---------AGGUGGacu -5'
31670 3' -56 NC_006883.1 + 23431 0.8 0.319679
Target:  5'- uGGACCUGGuGGACCugUaggaCCAUCUGGu -3'
miRNA:   3'- -CCUGGACCuCCUGGugAa---GGUGGACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.