miRNA display CGI


Results 1 - 20 of 50 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31670 3' -56 NC_006883.1 + 21581 0.66 0.965791
Target:  5'- uGGuCCUGGuccuacuGGACCuGCUggUCCuCCUGGu -3'
miRNA:   3'- -CCuGGACCu------CCUGG-UGA--AGGuGGACU- -5'
31670 3' -56 NC_006883.1 + 21719 0.66 0.968788
Target:  5'- aGGACCaGuAGGACCACcaccguUUCCACUa-- -3'
miRNA:   3'- -CCUGGaCcUCCUGGUG------AAGGUGGacu -5'
31670 3' -56 NC_006883.1 + 21773 0.79 0.360811
Target:  5'- aGGACCUGGAGGACCAgaaggaccaguuaUUCCaguuggACCUGGa -3'
miRNA:   3'- -CCUGGACCUCCUGGUg------------AAGG------UGGACU- -5'
31670 3' -56 NC_006883.1 + 21809 0.7 0.861234
Target:  5'- aGGGCCaGcAGGACCAggaccgCCACCUGGa -3'
miRNA:   3'- -CCUGGaCcUCCUGGUgaa---GGUGGACU- -5'
31670 3' -56 NC_006883.1 + 21892 0.79 0.387524
Target:  5'- cGGACCUGGAGGACCACcagCaggACCaGAg -3'
miRNA:   3'- -CCUGGACCUCCUGGUGaa-Gg--UGGaCU- -5'
31670 3' -56 NC_006883.1 + 22006 0.67 0.939068
Target:  5'- aGGACCaguUGGAccaGGACC---UCCACUUGGa -3'
miRNA:   3'- -CCUGG---ACCU---CCUGGugaAGGUGGACU- -5'
31670 3' -56 NC_006883.1 + 22099 0.88 0.111726
Target:  5'- cGGACCUGGAGGACCACUUggaCCaggaggACCUGGa -3'
miRNA:   3'- -CCUGGACCUCCUGGUGAA---GG------UGGACU- -5'
31670 3' -56 NC_006883.1 + 22126 0.71 0.796868
Target:  5'- uGGACCaGcAGGACCAUcUCCACCa-- -3'
miRNA:   3'- -CCUGGaCcUCCUGGUGaAGGUGGacu -5'
31670 3' -56 NC_006883.1 + 22174 0.86 0.14708
Target:  5'- aGGACCUGGAGGACCACcaCUaggACCUGGa -3'
miRNA:   3'- -CCUGGACCUCCUGGUGaaGG---UGGACU- -5'
31670 3' -56 NC_006883.1 + 22209 0.72 0.755626
Target:  5'- nGACCUGGAGGACCAgcaggaccaggaCCACCa-- -3'
miRNA:   3'- cCUGGACCUCCUGGUgaa---------GGUGGacu -5'
31670 3' -56 NC_006883.1 + 22237 0.87 0.136534
Target:  5'- aGGACCaGGAGGACCACUUggaCCAUCUGGa -3'
miRNA:   3'- -CCUGGaCCUCCUGGUGAA---GGUGGACU- -5'
31670 3' -56 NC_006883.1 + 23206 0.79 0.379533
Target:  5'- aGGACCaGGAGGACCACUUggaCCAUCagGAc -3'
miRNA:   3'- -CCUGGaCCUCCUGGUGAA---GGUGGa-CU- -5'
31670 3' -56 NC_006883.1 + 23236 0.77 0.491444
Target:  5'- uGGACCUGGAGGACCACcagCaggACCa-- -3'
miRNA:   3'- -CCUGGACCUCCUGGUGaa-Gg--UGGacu -5'
31670 3' -56 NC_006883.1 + 23317 0.73 0.694863
Target:  5'- aGGACCUuGAGGACCAgUUggaCCACCg-- -3'
miRNA:   3'- -CCUGGAcCUCCUGGUgAA---GGUGGacu -5'
31670 3' -56 NC_006883.1 + 23353 0.68 0.919024
Target:  5'- aGGACCUacAGGACCAgUUggACCUGGa -3'
miRNA:   3'- -CCUGGAccUCCUGGUgAAggUGGACU- -5'
31670 3' -56 NC_006883.1 + 23386 0.74 0.645892
Target:  5'- gGGACCUGuGGGACCAgUUggACCUGGa -3'
miRNA:   3'- -CCUGGACcUCCUGGUgAAggUGGACU- -5'
31670 3' -56 NC_006883.1 + 23398 0.72 0.761144
Target:  5'- uGGugCUGGugguGGACCuggUCCugCUGGu -3'
miRNA:   3'- -CCugGACCu---CCUGGugaAGGugGACU- -5'
31670 3' -56 NC_006883.1 + 23431 0.8 0.319679
Target:  5'- uGGACCUGGuGGACCugUaggaCCAUCUGGu -3'
miRNA:   3'- -CCUGGACCuCCUGGugAa---GGUGGACU- -5'
31670 3' -56 NC_006883.1 + 23692 0.81 0.278361
Target:  5'- uGGACCUGGAGGACCAgcaggaccaggUCCACCa-- -3'
miRNA:   3'- -CCUGGACCUCCUGGUga---------AGGUGGacu -5'
31670 3' -56 NC_006883.1 + 23719 0.74 0.636037
Target:  5'- uGGACCUGGAGGACCuGCUgg-ACCaGAn -3'
miRNA:   3'- -CCUGGACCUCCUGG-UGAaggUGGaCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.