miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31670 3' -56 NC_006883.1 + 223064 0.84 0.192349
Target:  5'- aGGACCUGGAGGACCAacaggaCCACCaGAa -3'
miRNA:   3'- -CCUGGACCUCCUGGUgaa---GGUGGaCU- -5'
31670 3' -56 NC_006883.1 + 223025 0.66 0.971592
Target:  5'- aGGACCaGGAuuuccaacaGGACCAgUUgCACCa-- -3'
miRNA:   3'- -CCUGGaCCU---------CCUGGUgAAgGUGGacu -5'
31670 3' -56 NC_006883.1 + 222980 0.71 0.77925
Target:  5'- aGGACCaGGugaaccuuguGGACCAgUUCCACCa-- -3'
miRNA:   3'- -CCUGGaCCu---------CCUGGUgAAGGUGGacu -5'
31670 3' -56 NC_006883.1 + 211198 0.69 0.868481
Target:  5'- uGGAgcuuauCCUGGAGGACCACaagCC-UUUGAa -3'
miRNA:   3'- -CCU------GGACCUCCUGGUGaa-GGuGGACU- -5'
31670 3' -56 NC_006883.1 + 186560 0.67 0.939068
Target:  5'- uGAUaCUGGAGaACCACcUgCACCUGAg -3'
miRNA:   3'- cCUG-GACCUCcUGGUGaAgGUGGACU- -5'
31670 3' -56 NC_006883.1 + 165904 0.66 0.971592
Target:  5'- -aACCUGGAGGACauuuagACUUCCuCUUaGAu -3'
miRNA:   3'- ccUGGACCUCCUGg-----UGAAGGuGGA-CU- -5'
31670 3' -56 NC_006883.1 + 28555 1.11 0.003934
Target:  5'- uGGACCUGGAGGACCACUUCCACCUGAa -3'
miRNA:   3'- -CCUGGACCUCCUGGUGAAGGUGGACU- -5'
31670 3' -56 NC_006883.1 + 28519 0.7 0.838365
Target:  5'- uGGACCaguUGGAccagucGGACCAgUUCCACCn-- -3'
miRNA:   3'- -CCUGG---ACCU------CCUGGUgAAGGUGGacu -5'
31670 3' -56 NC_006883.1 + 28486 0.83 0.227173
Target:  5'- uGGACCaGGAGGACCAUcUCCACCa-- -3'
miRNA:   3'- -CCUGGaCCUCCUGGUGaAGGUGGacu -5'
31670 3' -56 NC_006883.1 + 28450 0.85 0.166314
Target:  5'- aGGuCCUGGAGGACCACUUCCuCCa-- -3'
miRNA:   3'- -CCuGGACCUCCUGGUGAAGGuGGacu -5'
31670 3' -56 NC_006883.1 + 28405 0.93 0.055847
Target:  5'- aGGACCUGGAGGACCACUUCCcCCa-- -3'
miRNA:   3'- -CCUGGACCUCCUGGUGAAGGuGGacu -5'
31670 3' -56 NC_006883.1 + 28360 0.82 0.24938
Target:  5'- aGGuCCUGGAGGACCAgCaggaccagUUCCGCCUGGa -3'
miRNA:   3'- -CCuGGACCUCCUGGU-G--------AAGGUGGACU- -5'
31670 3' -56 NC_006883.1 + 28318 0.83 0.227173
Target:  5'- aGGACCUGGAGGACCAUcaUCACCa-- -3'
miRNA:   3'- -CCUGGACCUCCUGGUGaaGGUGGacu -5'
31670 3' -56 NC_006883.1 + 28291 0.79 0.363886
Target:  5'- aGGACCaGuuGGACCAgUUCCGCCUGGa -3'
miRNA:   3'- -CCUGGaCcuCCUGGUgAAGGUGGACU- -5'
31670 3' -56 NC_006883.1 + 28258 0.91 0.072374
Target:  5'- uGGACCUGGAGGACCAUcUCCACCa-- -3'
miRNA:   3'- -CCUGGACCUCCUGGUGaAGGUGGacu -5'
31670 3' -56 NC_006883.1 + 28222 0.72 0.742613
Target:  5'- aGGACCaGucGGACCAgUUCCACCa-- -3'
miRNA:   3'- -CCUGGaCcuCCUGGUgAAGGUGGacu -5'
31670 3' -56 NC_006883.1 + 28168 0.82 0.27335
Target:  5'- aGGACCaGuuGGACCAgUUCCACCUGAa -3'
miRNA:   3'- -CCUGGaCcuCCUGGUgAAGGUGGACU- -5'
31670 3' -56 NC_006883.1 + 28096 0.76 0.538432
Target:  5'- uGGACCUGGAGGACCAgcaggaCCuaaAUCUGAu -3'
miRNA:   3'- -CCUGGACCUCCUGGUgaa---GG---UGGACU- -5'
31670 3' -56 NC_006883.1 + 27722 0.7 0.853796
Target:  5'- gGGACCUGucGGACCAgUaggaccugaUCCACCa-- -3'
miRNA:   3'- -CCUGGACcuCCUGGUgA---------AGGUGGacu -5'
31670 3' -56 NC_006883.1 + 27659 0.82 0.24938
Target:  5'- aGGACCUGGAGGACCuGCUgg-ACCUGGa -3'
miRNA:   3'- -CCUGGACCUCCUGG-UGAaggUGGACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.