miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31670 3' -56 NC_006883.1 + 23919 0.72 0.761144
Target:  5'- uGGACCUGuAGGACCuGCUggaCCugUUGAu -3'
miRNA:   3'- -CCUGGACcUCCUGG-UGAa--GGugGACU- -5'
31670 3' -56 NC_006883.1 + 24969 0.73 0.714166
Target:  5'- uGGACCUGauGGACCACUUggACCUGu -3'
miRNA:   3'- -CCUGGACcuCCUGGUGAAggUGGACu -5'
31670 3' -56 NC_006883.1 + 25005 0.92 0.063594
Target:  5'- aGGACCUGGAGGACCGCUaggaCCACUUGGa -3'
miRNA:   3'- -CCUGGACCUCCUGGUGAa---GGUGGACU- -5'
31670 3' -56 NC_006883.1 + 26554 0.71 0.813933
Target:  5'- aGGACCUGcuGGACCugUaggaCCugCUGGa -3'
miRNA:   3'- -CCUGGACcuCCUGGugAa---GGugGACU- -5'
31670 3' -56 NC_006883.1 + 26671 0.84 0.20864
Target:  5'- uGGACCUGGAGGACCgucuggaccaguuggACcagUUCCACCUGu -3'
miRNA:   3'- -CCUGGACCUCCUGG---------------UG---AAGGUGGACu -5'
31670 3' -56 NC_006883.1 + 26698 0.82 0.261142
Target:  5'- uGGACCUGGAGuACCAgUUCCACCa-- -3'
miRNA:   3'- -CCUGGACCUCcUGGUgAAGGUGGacu -5'
31670 3' -56 NC_006883.1 + 26770 0.74 0.655737
Target:  5'- uGGACCUGcAGGACCAgUUgCACCa-- -3'
miRNA:   3'- -CCUGGACcUCCUGGUgAAgGUGGacu -5'
31670 3' -56 NC_006883.1 + 27515 0.69 0.882379
Target:  5'- aGGACCUGauGGACCugUaggaCCugCUGGa -3'
miRNA:   3'- -CCUGGACcuCCUGGugAa---GGugGACU- -5'
31670 3' -56 NC_006883.1 + 27542 0.97 0.033066
Target:  5'- uGGACCUGGAGGACCAUcUCCACCUGu -3'
miRNA:   3'- -CCUGGACCUCCUGGUGaAGGUGGACu -5'
31670 3' -56 NC_006883.1 + 27587 0.87 0.139276
Target:  5'- aGGACCUGGAGGACCuGCUggaccugugccaCCACCUGGa -3'
miRNA:   3'- -CCUGGACCUCCUGG-UGAa-----------GGUGGACU- -5'
31670 3' -56 NC_006883.1 + 27659 0.82 0.24938
Target:  5'- aGGACCUGGAGGACCuGCUgg-ACCUGGa -3'
miRNA:   3'- -CCUGGACCUCCUGG-UGAaggUGGACU- -5'
31670 3' -56 NC_006883.1 + 27722 0.7 0.853796
Target:  5'- gGGACCUGucGGACCAgUaggaccugaUCCACCa-- -3'
miRNA:   3'- -CCUGGACcuCCUGGUgA---------AGGUGGacu -5'
31670 3' -56 NC_006883.1 + 28096 0.76 0.538432
Target:  5'- uGGACCUGGAGGACCAgcaggaCCuaaAUCUGAu -3'
miRNA:   3'- -CCUGGACCUCCUGGUgaa---GG---UGGACU- -5'
31670 3' -56 NC_006883.1 + 28168 0.82 0.27335
Target:  5'- aGGACCaGuuGGACCAgUUCCACCUGAa -3'
miRNA:   3'- -CCUGGaCcuCCUGGUgAAGGUGGACU- -5'
31670 3' -56 NC_006883.1 + 28222 0.72 0.742613
Target:  5'- aGGACCaGucGGACCAgUUCCACCa-- -3'
miRNA:   3'- -CCUGGaCcuCCUGGUgAAGGUGGacu -5'
31670 3' -56 NC_006883.1 + 28258 0.91 0.072374
Target:  5'- uGGACCUGGAGGACCAUcUCCACCa-- -3'
miRNA:   3'- -CCUGGACCUCCUGGUGaAGGUGGacu -5'
31670 3' -56 NC_006883.1 + 28291 0.79 0.363886
Target:  5'- aGGACCaGuuGGACCAgUUCCGCCUGGa -3'
miRNA:   3'- -CCUGGaCcuCCUGGUgAAGGUGGACU- -5'
31670 3' -56 NC_006883.1 + 28318 0.83 0.227173
Target:  5'- aGGACCUGGAGGACCAUcaUCACCa-- -3'
miRNA:   3'- -CCUGGACCUCCUGGUGaaGGUGGacu -5'
31670 3' -56 NC_006883.1 + 28360 0.82 0.24938
Target:  5'- aGGuCCUGGAGGACCAgCaggaccagUUCCGCCUGGa -3'
miRNA:   3'- -CCuGGACCUCCUGGU-G--------AAGGUGGACU- -5'
31670 3' -56 NC_006883.1 + 28405 0.93 0.055847
Target:  5'- aGGACCUGGAGGACCACUUCCcCCa-- -3'
miRNA:   3'- -CCUGGACCUCCUGGUGAAGGuGGacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.