miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31670 3' -56 NC_006883.1 + 23317 0.73 0.694863
Target:  5'- aGGACCUuGAGGACCAgUUggaCCACCg-- -3'
miRNA:   3'- -CCUGGAcCUCCUGGUgAA---GGUGGacu -5'
31670 3' -56 NC_006883.1 + 26770 0.74 0.655737
Target:  5'- uGGACCUGcAGGACCAgUUgCACCa-- -3'
miRNA:   3'- -CCUGGACcUCCUGGUgAAgGUGGacu -5'
31670 3' -56 NC_006883.1 + 23386 0.74 0.645892
Target:  5'- gGGACCUGuGGGACCAgUUggACCUGGa -3'
miRNA:   3'- -CCUGGACcUCCUGGUgAAggUGGACU- -5'
31670 3' -56 NC_006883.1 + 23719 0.74 0.636037
Target:  5'- uGGACCUGGAGGACCuGCUgg-ACCaGAn -3'
miRNA:   3'- -CCUGGACCUCCUGG-UGAaggUGGaCU- -5'
31670 3' -56 NC_006883.1 + 28096 0.76 0.538432
Target:  5'- uGGACCUGGAGGACCAgcaggaCCuaaAUCUGAu -3'
miRNA:   3'- -CCUGGACCUCCUGGUgaa---GG---UGGACU- -5'
31670 3' -56 NC_006883.1 + 23236 0.77 0.491444
Target:  5'- uGGACCUGGAGGACCACcagCaggACCa-- -3'
miRNA:   3'- -CCUGGACCUCCUGGUGaa-Gg--UGGacu -5'
31670 3' -56 NC_006883.1 + 21892 0.79 0.387524
Target:  5'- cGGACCUGGAGGACCACcagCaggACCaGAg -3'
miRNA:   3'- -CCUGGACCUCCUGGUGaa-Gg--UGGaCU- -5'
31670 3' -56 NC_006883.1 + 23206 0.79 0.379533
Target:  5'- aGGACCaGGAGGACCACUUggaCCAUCagGAc -3'
miRNA:   3'- -CCUGGaCCUCCUGGUGAA---GGUGGa-CU- -5'
31670 3' -56 NC_006883.1 + 28291 0.79 0.363886
Target:  5'- aGGACCaGuuGGACCAgUUCCGCCUGGa -3'
miRNA:   3'- -CCUGGaCcuCCUGGUgAAGGUGGACU- -5'
31670 3' -56 NC_006883.1 + 21773 0.79 0.360811
Target:  5'- aGGACCUGGAGGACCAgaaggaccaguuaUUCCaguuggACCUGGa -3'
miRNA:   3'- -CCUGGACCUCCUGGUg------------AAGG------UGGACU- -5'
31670 3' -56 NC_006883.1 + 23431 0.8 0.319679
Target:  5'- uGGACCUGGuGGACCugUaggaCCAUCUGGu -3'
miRNA:   3'- -CCUGGACCuCCUGGugAa---GGUGGACU- -5'
31670 3' -56 NC_006883.1 + 23692 0.81 0.278361
Target:  5'- uGGACCUGGAGGACCAgcaggaccaggUCCACCa-- -3'
miRNA:   3'- -CCUGGACCUCCUGGUga---------AGGUGGacu -5'
31670 3' -56 NC_006883.1 + 28168 0.82 0.27335
Target:  5'- aGGACCaGuuGGACCAgUUCCACCUGAa -3'
miRNA:   3'- -CCUGGaCcuCCUGGUgAAGGUGGACU- -5'
31670 3' -56 NC_006883.1 + 26698 0.82 0.261142
Target:  5'- uGGACCUGGAGuACCAgUUCCACCa-- -3'
miRNA:   3'- -CCUGGACCUCcUGGUgAAGGUGGacu -5'
31670 3' -56 NC_006883.1 + 28360 0.82 0.24938
Target:  5'- aGGuCCUGGAGGACCAgCaggaccagUUCCGCCUGGa -3'
miRNA:   3'- -CCuGGACCUCCUGGU-G--------AAGGUGGACU- -5'
31670 3' -56 NC_006883.1 + 27659 0.82 0.24938
Target:  5'- aGGACCUGGAGGACCuGCUgg-ACCUGGa -3'
miRNA:   3'- -CCUGGACCUCCUGG-UGAaggUGGACU- -5'
31670 3' -56 NC_006883.1 + 28318 0.83 0.227173
Target:  5'- aGGACCUGGAGGACCAUcaUCACCa-- -3'
miRNA:   3'- -CCUGGACCUCCUGGUGaaGGUGGacu -5'
31670 3' -56 NC_006883.1 + 28486 0.83 0.227173
Target:  5'- uGGACCaGGAGGACCAUcUCCACCa-- -3'
miRNA:   3'- -CCUGGaCCUCCUGGUGaAGGUGGacu -5'
31670 3' -56 NC_006883.1 + 26671 0.84 0.20864
Target:  5'- uGGACCUGGAGGACCgucuggaccaguuggACcagUUCCACCUGu -3'
miRNA:   3'- -CCUGGACCUCCUGG---------------UG---AAGGUGGACu -5'
31670 3' -56 NC_006883.1 + 223064 0.84 0.192349
Target:  5'- aGGACCUGGAGGACCAacaggaCCACCaGAa -3'
miRNA:   3'- -CCUGGACCUCCUGGUgaa---GGUGGaCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.