Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31670 | 5' | -55.6 | NC_006883.1 | + | 28518 | 1.04 | 0.009438 |
Target: 5'- gGACCAGUUGGACCAGUCGGACCAGUUc -3' miRNA: 3'- -CUGGUCAACCUGGUCAGCCUGGUCAA- -5' |
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31670 | 5' | -55.6 | NC_006883.1 | + | 23936 | 0.94 | 0.047609 |
Target: 5'- gGACCAGUUGGACCAGUUGGACCuGUa -3' miRNA: 3'- -CUGGUCAACCUGGUCAGCCUGGuCAa -5' |
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31670 | 5' | -55.6 | NC_006883.1 | + | 28140 | 0.94 | 0.047609 |
Target: 5'- gGACCAGUUGGACCAGUUGGACCuGUa -3' miRNA: 3'- -CUGGUCAACCUGGUCAGCCUGGuCAa -5' |
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31670 | 5' | -55.6 | NC_006883.1 | + | 28230 | 0.93 | 0.052954 |
Target: 5'- gGACCAGcaGGACCAGUCGGACCAGUUc -3' miRNA: 3'- -CUGGUCaaCCUGGUCAGCCUGGUCAA- -5' |
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31670 | 5' | -55.6 | NC_006883.1 | + | 27757 | 0.92 | 0.063741 |
Target: 5'- gGACCAGUUGGACCuGUgGGACCAGUUg -3' miRNA: 3'- -CUGGUCAACCUGGuCAgCCUGGUCAA- -5' |
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31670 | 5' | -55.6 | NC_006883.1 | + | 28290 | 0.91 | 0.065446 |
Target: 5'- gGACCAGUUGGACCAGUuccgccUGGACCAGUUg -3' miRNA: 3'- -CUGGUCAACCUGGUCA------GCCUGGUCAA- -5' |
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31670 | 5' | -55.6 | NC_006883.1 | + | 21936 | 0.89 | 0.087339 |
Target: 5'- gGACCAGUUGGACCuGUUGGACCAGc- -3' miRNA: 3'- -CUGGUCAACCUGGuCAGCCUGGUCaa -5' |
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31670 | 5' | -55.6 | NC_006883.1 | + | 22014 | 0.87 | 0.131895 |
Target: 5'- gGACCAGcaGGACCAGUUGGACCAGg- -3' miRNA: 3'- -CUGGUCaaCCUGGUCAGCCUGGUCaa -5' |
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31670 | 5' | -55.6 | NC_006883.1 | + | 26661 | 0.86 | 0.135287 |
Target: 5'- gGACCGucUGGACCAGUUGGACCAGUUc -3' miRNA: 3'- -CUGGUcaACCUGGUCAGCCUGGUCAA- -5' |
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31670 | 5' | -55.6 | NC_006883.1 | + | 28175 | 0.85 | 0.153474 |
Target: 5'- cACCAGcaGGACCAGUUGGACCAGUUc -3' miRNA: 3'- cUGGUCaaCCUGGUCAGCCUGGUCAA- -5' |
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31670 | 5' | -55.6 | NC_006883.1 | + | 26778 | 0.84 | 0.178205 |
Target: 5'- gGACCAGUUGGACCugcaGGACCAGUUg -3' miRNA: 3'- -CUGGUCAACCUGGucagCCUGGUCAA- -5' |
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31670 | 5' | -55.6 | NC_006883.1 | + | 26625 | 0.83 | 0.211473 |
Target: 5'- gGACCAGcaGGACCAGUUGGACCuGUUg -3' miRNA: 3'- -CUGGUCaaCCUGGUCAGCCUGGuCAA- -5' |
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31670 | 5' | -55.6 | NC_006883.1 | + | 26805 | 0.81 | 0.27443 |
Target: 5'- gGACCAGUUGGACCuGgUGGACCAGc- -3' miRNA: 3'- -CUGGUCAACCUGGuCaGCCUGGUCaa -5' |
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31670 | 5' | -55.6 | NC_006883.1 | + | 223033 | 0.8 | 0.334956 |
Target: 5'- gGACCAGUaGGACCAGgauuuccaacaGGACCAGUUg -3' miRNA: 3'- -CUGGUCAaCCUGGUCag---------CCUGGUCAA- -5' |
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31670 | 5' | -55.6 | NC_006883.1 | + | 28104 | 0.79 | 0.351535 |
Target: 5'- gGACCAGUUGGACCuggaGGACCAGc- -3' miRNA: 3'- -CUGGUCAACCUGGucagCCUGGUCaa -5' |
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31670 | 5' | -55.6 | NC_006883.1 | + | 22058 | 0.78 | 0.383145 |
Target: 5'- cACCAGcaGGACCAGUUGGACCuGUa -3' miRNA: 3'- cUGGUCaaCCUGGUCAGCCUGGuCAa -5' |
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31670 | 5' | -55.6 | NC_006883.1 | + | 222924 | 0.78 | 0.425222 |
Target: 5'- aACCAGUaGGACCAG-CaGGACCAGUa -3' miRNA: 3'- cUGGUCAaCCUGGUCaG-CCUGGUCAa -5' |
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31670 | 5' | -55.6 | NC_006883.1 | + | 21772 | 0.77 | 0.442808 |
Target: 5'- gGACCuGgaGGACCAGaaGGACCAGUUa -3' miRNA: 3'- -CUGGuCaaCCUGGUCagCCUGGUCAA- -5' |
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31670 | 5' | -55.6 | NC_006883.1 | + | 23394 | 0.77 | 0.442808 |
Target: 5'- gGACCuGUgGGACCuGUgGGACCAGUUg -3' miRNA: 3'- -CUGGuCAaCCUGGuCAgCCUGGUCAA- -5' |
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31670 | 5' | -55.6 | NC_006883.1 | + | 23343 | 0.76 | 0.497883 |
Target: 5'- gGACCAGUUGGACCuggagaaccagcAGgaccuugaGGACCAGUUg -3' miRNA: 3'- -CUGGUCAACCUGG------------UCag------CCUGGUCAA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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