miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31670 5' -55.6 NC_006883.1 + 21727 0.74 0.625586
Target:  5'- gGACCAGcaGGACCAGUaGGACCAc-- -3'
miRNA:   3'- -CUGGUCaaCCUGGUCAgCCUGGUcaa -5'
31670 5' -55.6 NC_006883.1 + 21772 0.77 0.442808
Target:  5'- gGACCuGgaGGACCAGaaGGACCAGUUa -3'
miRNA:   3'- -CUGGuCaaCCUGGUCagCCUGGUCAA- -5'
31670 5' -55.6 NC_006883.1 + 21808 0.7 0.824965
Target:  5'- gGGCCAGcaGGACCAGgaccgccaccUGGACCAGa- -3'
miRNA:   3'- -CUGGUCaaCCUGGUCa---------GCCUGGUCaa -5'
31670 5' -55.6 NC_006883.1 + 21862 0.72 0.72493
Target:  5'- gGACCAGcaGGuCCAGUaGGACCAGg- -3'
miRNA:   3'- -CUGGUCaaCCuGGUCAgCCUGGUCaa -5'
31670 5' -55.6 NC_006883.1 + 21936 0.89 0.087339
Target:  5'- gGACCAGUUGGACCuGUUGGACCAGc- -3'
miRNA:   3'- -CUGGUCAACCUGGuCAGCCUGGUCaa -5'
31670 5' -55.6 NC_006883.1 + 21978 0.72 0.705404
Target:  5'- gGACCAGgaGGACCugcaGGACCAGg- -3'
miRNA:   3'- -CUGGUCaaCCUGGucagCCUGGUCaa -5'
31670 5' -55.6 NC_006883.1 + 22014 0.87 0.131895
Target:  5'- gGACCAGcaGGACCAGUUGGACCAGg- -3'
miRNA:   3'- -CUGGUCaaCCUGGUCAGCCUGGUCaa -5'
31670 5' -55.6 NC_006883.1 + 22058 0.78 0.383145
Target:  5'- cACCAGcaGGACCAGUUGGACCuGUa -3'
miRNA:   3'- cUGGUCaaCCUGGUCAGCCUGGuCAa -5'
31670 5' -55.6 NC_006883.1 + 22098 0.72 0.734581
Target:  5'- gGACCuGgaGGACCAcUUGGACCAGg- -3'
miRNA:   3'- -CUGGuCaaCCUGGUcAGCCUGGUCaa -5'
31670 5' -55.6 NC_006883.1 + 22152 0.68 0.892267
Target:  5'- gGACCuGgaGGACCAGgugaaccacUUGGACCAGc- -3'
miRNA:   3'- -CUGGuCaaCCUGGUC---------AGCCUGGUCaa -5'
31670 5' -55.6 NC_006883.1 + 22209 0.71 0.799259
Target:  5'- gGACCuGgaGGACCAG-CaGGACCAGg- -3'
miRNA:   3'- -CUGGuCaaCCUGGUCaG-CCUGGUCaa -5'
31670 5' -55.6 NC_006883.1 + 22236 0.73 0.665706
Target:  5'- gGACCAGgaGGACCAcUUGGACCAu-- -3'
miRNA:   3'- -CUGGUCaaCCUGGUcAGCCUGGUcaa -5'
31670 5' -55.6 NC_006883.1 + 23150 0.76 0.507365
Target:  5'- cACCAGcaGGACCAGUUGGACCuGg- -3'
miRNA:   3'- cUGGUCaaCCUGGUCAGCCUGGuCaa -5'
31670 5' -55.6 NC_006883.1 + 23205 0.73 0.665706
Target:  5'- gGACCAGgaGGACCAcUUGGACCAu-- -3'
miRNA:   3'- -CUGGUCaaCCUGGUcAGCCUGGUcaa -5'
31670 5' -55.6 NC_006883.1 + 23252 0.76 0.507365
Target:  5'- cACCAGcaGGACCAGUUGGACCuGg- -3'
miRNA:   3'- cUGGUCaaCCUGGUCAGCCUGGuCaa -5'
31670 5' -55.6 NC_006883.1 + 23343 0.76 0.497883
Target:  5'- gGACCAGUUGGACCuggagaaccagcAGgaccuugaGGACCAGUUg -3'
miRNA:   3'- -CUGGUCAACCUGG------------UCag------CCUGGUCAA- -5'
31670 5' -55.6 NC_006883.1 + 23394 0.77 0.442808
Target:  5'- gGACCuGUgGGACCuGUgGGACCAGUUg -3'
miRNA:   3'- -CUGGuCAaCCUGGuCAgCCUGGUCAA- -5'
31670 5' -55.6 NC_006883.1 + 23700 0.72 0.744147
Target:  5'- gGACCAGaUGGACCuggaGGACCAGc- -3'
miRNA:   3'- -CUGGUCaACCUGGucagCCUGGUCaa -5'
31670 5' -55.6 NC_006883.1 + 23936 0.94 0.047609
Target:  5'- gGACCAGUUGGACCAGUUGGACCuGUa -3'
miRNA:   3'- -CUGGUCAACCUGGUCAGCCUGGuCAa -5'
31670 5' -55.6 NC_006883.1 + 24959 0.66 0.950631
Target:  5'- gGACCAcUUGGACCuGUaGGACCuGg- -3'
miRNA:   3'- -CUGGUcAACCUGGuCAgCCUGGuCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.