Results 21 - 40 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31677 | 3' | -54.5 | NC_006883.1 | + | 23077 | 0.8 | 0.426311 |
Target: 5'- aGGUCCAacUGGUCCUGuagguccuucaaaucCAGGUCCAACu -3' miRNA: 3'- -CCAGGUcuGCCAGGAU---------------GUCCAGGUUG- -5' |
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31677 | 3' | -54.5 | NC_006883.1 | + | 26350 | 0.8 | 0.397611 |
Target: 5'- aGGUCCAacUGGUCCUGCuGGUCCcACa -3' miRNA: 3'- -CCAGGUcuGCCAGGAUGuCCAGGuUG- -5' |
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31677 | 3' | -54.5 | NC_006883.1 | + | 26485 | 0.86 | 0.201626 |
Target: 5'- uGGUCCugcuGGugcaacUGGUCCUGCAGGUCCAACu -3' miRNA: 3'- -CCAGGu---CU------GCCAGGAUGUCCAGGUUG- -5' |
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31677 | 3' | -54.5 | NC_006883.1 | + | 27973 | 0.87 | 0.17001 |
Target: 5'- uGGUCCuacugguggAGAUGGUCCUcCAGGUCCAACu -3' miRNA: 3'- -CCAGG---------UCUGCCAGGAuGUCCAGGUUG- -5' |
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31677 | 3' | -54.5 | NC_006883.1 | + | 23443 | 0.88 | 0.154 |
Target: 5'- uGGUCCAG-CaGGUCCUcCAGGUCCAGCa -3' miRNA: 3'- -CCAGGUCuG-CCAGGAuGUCCAGGUUG- -5' |
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31677 | 3' | -54.5 | NC_006883.1 | + | 27230 | 0.89 | 0.126022 |
Target: 5'- aGGUCCAG-CaGGUCCUACAGGUCCAu- -3' miRNA: 3'- -CCAGGUCuG-CCAGGAUGUCCAGGUug -5' |
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31677 | 3' | -54.5 | NC_006883.1 | + | 23146 | 0.92 | 0.081538 |
Target: 5'- uGGaCCAGAUGGUCCUACAGGUCCAc- -3' miRNA: 3'- -CCaGGUCUGCCAGGAUGUCCAGGUug -5' |
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31677 | 3' | -54.5 | NC_006883.1 | + | 23644 | 0.96 | 0.050931 |
Target: 5'- aGGUCCAG-CaGGUCCUACAGGUCCAACu -3' miRNA: 3'- -CCAGGUCuG-CCAGGAUGUCCAGGUUG- -5' |
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31677 | 3' | -54.5 | NC_006883.1 | + | 26269 | 0.96 | 0.047057 |
Target: 5'- uGGUCCAG-CaGGUCCUACAGGUCCAGCa -3' miRNA: 3'- -CCAGGUCuG-CCAGGAUGUCCAGGUUG- -5' |
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31677 | 3' | -54.5 | NC_006883.1 | + | 26395 | 0.98 | 0.036111 |
Target: 5'- uGGUCCAGACGGUCCUcCAGGUCCAGg -3' miRNA: 3'- -CCAGGUCUGCCAGGAuGUCCAGGUUg -5' |
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31677 | 3' | -54.5 | NC_006883.1 | + | 27284 | 0.86 | 0.206539 |
Target: 5'- aGGUCCAGGUGGUCCaggugguggcACAGGUCCAGCa -3' miRNA: 3'- -CCAGGUCUGCCAGGa---------UGUCCAGGUUG- -5' |
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31677 | 3' | -54.5 | NC_006883.1 | + | 21842 | 0.84 | 0.24389 |
Target: 5'- aGGUCCgagugguggAGAUGGUCCUGCuGGUCCAAg -3' miRNA: 3'- -CCAGG---------UCUGCCAGGAUGuCCAGGUUg -5' |
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31677 | 3' | -54.5 | NC_006883.1 | + | 28228 | 0.8 | 0.38941 |
Target: 5'- uGGUCCAGGuggaacUGGUCCgACuGGUCCAACu -3' miRNA: 3'- -CCAGGUCU------GCCAGGaUGuCCAGGUUG- -5' |
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31677 | 3' | -54.5 | NC_006883.1 | + | 27848 | 0.81 | 0.373342 |
Target: 5'- uGGUCCuacaGGaCCUACAGGUCCAACu -3' miRNA: 3'- -CCAGGucugCCaGGAUGUCCAGGUUG- -5' |
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31677 | 3' | -54.5 | NC_006883.1 | + | 27464 | 0.81 | 0.350098 |
Target: 5'- aGGUCCcacaGGACcaacuGGUCCcACAGGUCCAACu -3' miRNA: 3'- -CCAGG----UCUG-----CCAGGaUGUCCAGGUUG- -5' |
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31677 | 3' | -54.5 | NC_006883.1 | + | 28069 | 0.82 | 0.327902 |
Target: 5'- aGGUCCAGGCGGaacuggUCCUGCuGGUCCu-- -3' miRNA: 3'- -CCAGGUCUGCC------AGGAUGuCCAGGuug -5' |
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31677 | 3' | -54.5 | NC_006883.1 | + | 24739 | 0.83 | 0.286686 |
Target: 5'- cGGUCCuccaGGUCCUcCAGGUCCAACa -3' miRNA: 3'- -CCAGGucugCCAGGAuGUCCAGGUUG- -5' |
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31677 | 3' | -54.5 | NC_006883.1 | + | 22957 | 0.83 | 0.286686 |
Target: 5'- uGGUCCugcuGGUGGUCCUcCAGGUCCAACu -3' miRNA: 3'- -CCAGGu---CUGCCAGGAuGUCCAGGUUG- -5' |
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31677 | 3' | -54.5 | NC_006883.1 | + | 21461 | 0.84 | 0.267658 |
Target: 5'- uGGUCCuGcUGGUCCUcCAGGUCCAACu -3' miRNA: 3'- -CCAGGuCuGCCAGGAuGUCCAGGUUG- -5' |
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31677 | 3' | -54.5 | NC_006883.1 | + | 27821 | 0.84 | 0.255547 |
Target: 5'- aGGUCCuGcUGGUCCUcCAGGUCCAACu -3' miRNA: 3'- -CCAGGuCuGCCAGGAuGUCCAGGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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