miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31677 3' -54.5 NC_006883.1 + 23077 0.8 0.426311
Target:  5'- aGGUCCAacUGGUCCUGuagguccuucaaaucCAGGUCCAACu -3'
miRNA:   3'- -CCAGGUcuGCCAGGAU---------------GUCCAGGUUG- -5'
31677 3' -54.5 NC_006883.1 + 21461 0.84 0.267658
Target:  5'- uGGUCCuGcUGGUCCUcCAGGUCCAACu -3'
miRNA:   3'- -CCAGGuCuGCCAGGAuGUCCAGGUUG- -5'
31677 3' -54.5 NC_006883.1 + 22957 0.83 0.286686
Target:  5'- uGGUCCugcuGGUGGUCCUcCAGGUCCAACu -3'
miRNA:   3'- -CCAGGu---CUGCCAGGAuGUCCAGGUUG- -5'
31677 3' -54.5 NC_006883.1 + 24739 0.83 0.286686
Target:  5'- cGGUCCuccaGGUCCUcCAGGUCCAACa -3'
miRNA:   3'- -CCAGGucugCCAGGAuGUCCAGGUUG- -5'
31677 3' -54.5 NC_006883.1 + 28069 0.82 0.327902
Target:  5'- aGGUCCAGGCGGaacuggUCCUGCuGGUCCu-- -3'
miRNA:   3'- -CCAGGUCUGCC------AGGAUGuCCAGGuug -5'
31677 3' -54.5 NC_006883.1 + 27464 0.81 0.350098
Target:  5'- aGGUCCcacaGGACcaacuGGUCCcACAGGUCCAACu -3'
miRNA:   3'- -CCAGG----UCUG-----CCAGGaUGUCCAGGUUG- -5'
31677 3' -54.5 NC_006883.1 + 27848 0.81 0.373342
Target:  5'- uGGUCCuacaGGaCCUACAGGUCCAACu -3'
miRNA:   3'- -CCAGGucugCCaGGAUGUCCAGGUUG- -5'
31677 3' -54.5 NC_006883.1 + 28228 0.8 0.38941
Target:  5'- uGGUCCAGGuggaacUGGUCCgACuGGUCCAACu -3'
miRNA:   3'- -CCAGGUCU------GCCAGGaUGuCCAGGUUG- -5'
31677 3' -54.5 NC_006883.1 + 26350 0.8 0.397611
Target:  5'- aGGUCCAacUGGUCCUGCuGGUCCcACa -3'
miRNA:   3'- -CCAGGUcuGCCAGGAUGuCCAGGuUG- -5'
31677 3' -54.5 NC_006883.1 + 27821 0.84 0.255547
Target:  5'- aGGUCCuGcUGGUCCUcCAGGUCCAACu -3'
miRNA:   3'- -CCAGGuCuGCCAGGAuGUCCAGGUUG- -5'
31677 3' -54.5 NC_006883.1 + 21842 0.84 0.24389
Target:  5'- aGGUCCgagugguggAGAUGGUCCUGCuGGUCCAAg -3'
miRNA:   3'- -CCAGG---------UCUGCCAGGAUGuCCAGGUUg -5'
31677 3' -54.5 NC_006883.1 + 27284 0.86 0.206539
Target:  5'- aGGUCCAGGUGGUCCaggugguggcACAGGUCCAGCa -3'
miRNA:   3'- -CCAGGUCUGCCAGGa---------UGUCCAGGUUG- -5'
31677 3' -54.5 NC_006883.1 + 26395 0.98 0.036111
Target:  5'- uGGUCCAGACGGUCCUcCAGGUCCAGg -3'
miRNA:   3'- -CCAGGUCUGCCAGGAuGUCCAGGUUg -5'
31677 3' -54.5 NC_006883.1 + 26269 0.96 0.047057
Target:  5'- uGGUCCAG-CaGGUCCUACAGGUCCAGCa -3'
miRNA:   3'- -CCAGGUCuG-CCAGGAUGUCCAGGUUG- -5'
31677 3' -54.5 NC_006883.1 + 23644 0.96 0.050931
Target:  5'- aGGUCCAG-CaGGUCCUACAGGUCCAACu -3'
miRNA:   3'- -CCAGGUCuG-CCAGGAUGUCCAGGUUG- -5'
31677 3' -54.5 NC_006883.1 + 23146 0.92 0.081538
Target:  5'- uGGaCCAGAUGGUCCUACAGGUCCAc- -3'
miRNA:   3'- -CCaGGUCUGCCAGGAUGUCCAGGUug -5'
31677 3' -54.5 NC_006883.1 + 27230 0.89 0.126022
Target:  5'- aGGUCCAG-CaGGUCCUACAGGUCCAu- -3'
miRNA:   3'- -CCAGGUCuG-CCAGGAUGUCCAGGUug -5'
31677 3' -54.5 NC_006883.1 + 23443 0.88 0.154
Target:  5'- uGGUCCAG-CaGGUCCUcCAGGUCCAGCa -3'
miRNA:   3'- -CCAGGUCuG-CCAGGAuGUCCAGGUUG- -5'
31677 3' -54.5 NC_006883.1 + 27973 0.87 0.17001
Target:  5'- uGGUCCuacugguggAGAUGGUCCUcCAGGUCCAACu -3'
miRNA:   3'- -CCAGG---------UCUGCCAGGAuGUCCAGGUUG- -5'
31677 3' -54.5 NC_006883.1 + 26485 0.86 0.201626
Target:  5'- uGGUCCugcuGGugcaacUGGUCCUGCAGGUCCAACu -3'
miRNA:   3'- -CCAGGu---CU------GCCAGGAUGUCCAGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.