miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31677 3' -54.5 NC_006883.1 + 21461 0.84 0.267658
Target:  5'- uGGUCCuGcUGGUCCUcCAGGUCCAACu -3'
miRNA:   3'- -CCAGGuCuGCCAGGAuGUCCAGGUUG- -5'
31677 3' -54.5 NC_006883.1 + 21497 0.72 0.82771
Target:  5'- uGGUCCuucUGGUCCUcCAGGUCCu-- -3'
miRNA:   3'- -CCAGGucuGCCAGGAuGUCCAGGuug -5'
31677 3' -54.5 NC_006883.1 + 21524 0.75 0.68046
Target:  5'- uGGUCCAGgugGCGGUCCU---GGUCCuGCu -3'
miRNA:   3'- -CCAGGUC---UGCCAGGAuguCCAGGuUG- -5'
31677 3' -54.5 NC_006883.1 + 21614 0.75 0.660678
Target:  5'- uGGUCCugcuGGUGGUCCUcCAGGUCCGc- -3'
miRNA:   3'- -CCAGGu---CUGCCAGGAuGUCCAGGUug -5'
31677 3' -54.5 NC_006883.1 + 21644 0.79 0.476139
Target:  5'- aGGUCCGcaagguGAUgcuGGUCCaACAGGUCCAACu -3'
miRNA:   3'- -CCAGGU------CUG---CCAGGaUGUCCAGGUUG- -5'
31677 3' -54.5 NC_006883.1 + 21680 0.76 0.620912
Target:  5'- uGGUCCuccugguacuGGAucuccUGGUCCUGCAGGUCCu-- -3'
miRNA:   3'- -CCAGG----------UCU-----GCCAGGAUGUCCAGGuug -5'
31677 3' -54.5 NC_006883.1 + 21740 0.77 0.561633
Target:  5'- uGGUCCAacUGGUCCUGCuGGUCCu-- -3'
miRNA:   3'- -CCAGGUcuGCCAGGAUGuCCAGGuug -5'
31677 3' -54.5 NC_006883.1 + 21744 0.66 0.980906
Target:  5'- -uUCCAGuuGGaCCUGgAGGaCCAGCa -3'
miRNA:   3'- ccAGGUCugCCaGGAUgUCCaGGUUG- -5'
31677 3' -54.5 NC_006883.1 + 21767 1.11 0.005094
Target:  5'- gGGUCCAGACGGUCCUACAGGUCCAACu -3'
miRNA:   3'- -CCAGGUCUGCCAGGAUGUCCAGGUUG- -5'
31677 3' -54.5 NC_006883.1 + 21794 0.73 0.748082
Target:  5'- uGGUCCugcuGGUGGUCCUcCAGGUCCu-- -3'
miRNA:   3'- -CCAGGu---CUGCCAGGAuGUCCAGGuug -5'
31677 3' -54.5 NC_006883.1 + 21842 0.84 0.24389
Target:  5'- aGGUCCgagugguggAGAUGGUCCUGCuGGUCCAAg -3'
miRNA:   3'- -CCAGG---------UCUGCCAGGAUGuCCAGGUUg -5'
31677 3' -54.5 NC_006883.1 + 21871 0.69 0.933511
Target:  5'- aGGaCCAGA-GGaCCaGCAGGUCCAGu -3'
miRNA:   3'- -CCaGGUCUgCCaGGaUGUCCAGGUUg -5'
31677 3' -54.5 NC_006883.1 + 21896 0.74 0.729115
Target:  5'- aGGUCCuaguGGUGGUCCUcCAGGUCCu-- -3'
miRNA:   3'- -CCAGGu---CUGCCAGGAuGUCCAGGuug -5'
31677 3' -54.5 NC_006883.1 + 21929 0.71 0.866439
Target:  5'- uGGUCC---UGGUCCUGCuGGUCCu-- -3'
miRNA:   3'- -CCAGGucuGCCAGGAUGuCCAGGuug -5'
31677 3' -54.5 NC_006883.1 + 21961 0.71 0.859069
Target:  5'- uGGUCCAagUGGUCCUcCuGGUCCuGCu -3'
miRNA:   3'- -CCAGGUcuGCCAGGAuGuCCAGGuUG- -5'
31677 3' -54.5 NC_006883.1 + 21979 0.67 0.974006
Target:  5'- uGGaCCAGGaGGaCCUGCAGGaCCAGg -3'
miRNA:   3'- -CCaGGUCUgCCaGGAUGUCCaGGUUg -5'
31677 3' -54.5 NC_006883.1 + 22877 0.72 0.810995
Target:  5'- aGGUCCAacUGGUCCUGCuggugcuccAGGUUUAACu -3'
miRNA:   3'- -CCAGGUcuGCCAGGAUG---------UCCAGGUUG- -5'
31677 3' -54.5 NC_006883.1 + 22922 0.75 0.65075
Target:  5'- uGGUCCuGAUGGUCCaAguGGUCCu-- -3'
miRNA:   3'- -CCAGGuCUGCCAGGaUguCCAGGuug -5'
31677 3' -54.5 NC_006883.1 + 22957 0.83 0.286686
Target:  5'- uGGUCCugcuGGUGGUCCUcCAGGUCCAACu -3'
miRNA:   3'- -CCAGGu---CUGCCAGGAuGUCCAGGUUG- -5'
31677 3' -54.5 NC_006883.1 + 23041 0.73 0.784793
Target:  5'- uGGUCCAacUGGUCCUcaAGGUCCuGCu -3'
miRNA:   3'- -CCAGGUcuGCCAGGAugUCCAGGuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.