miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31677 5' -60 NC_006883.1 + 21459 0.81 0.156436
Target:  5'- aCUGGUccugcuGGUCCUCCAGGUCCaaCUGGa -3'
miRNA:   3'- -GACCA------CCAGGAGGUCCAGGagGACCa -5'
31677 5' -60 NC_006883.1 + 21495 0.91 0.035414
Target:  5'- aCUGGUccuucuGGUCCUCCAGGUCCUUCUGGUc -3'
miRNA:   3'- -GACCA------CCAGGAGGUCCAGGAGGACCA- -5'
31677 5' -60 NC_006883.1 + 21577 0.82 0.131962
Target:  5'- gUGGUGGUCCUgguccuacuggaCCugcuGGUCCUCCUGGUc -3'
miRNA:   3'- gACCACCAGGA------------GGu---CCAGGAGGACCA- -5'
31677 5' -60 NC_006883.1 + 21621 0.87 0.068942
Target:  5'- gCUGGUGGUCCUCCAGGUCCgcaaggUCCgcaaGGUg -3'
miRNA:   3'- -GACCACCAGGAGGUCCAGG------AGGa---CCA- -5'
31677 5' -60 NC_006883.1 + 21660 0.75 0.354931
Target:  5'- gCUGGUccaacaGGUCCaaCuGGUCCUCCUGGUn -3'
miRNA:   3'- -GACCA------CCAGGagGuCCAGGAGGACCA- -5'
31677 5' -60 NC_006883.1 + 21693 0.88 0.057693
Target:  5'- aCUGGaucuccUGGUCCUgCAGGUCCUCCUGGUc -3'
miRNA:   3'- -GACC------ACCAGGAgGUCCAGGAGGACCA- -5'
31677 5' -60 NC_006883.1 + 21730 0.7 0.628634
Target:  5'- gUGGaGGUCCuggUCCAacuGGUCCUgCUGGUc -3'
miRNA:   3'- gACCaCCAGG---AGGU---CCAGGAgGACCA- -5'
31677 5' -60 NC_006883.1 + 21767 0.66 0.844625
Target:  5'- -gGGUccagacGGUCCUaCAGGUCCaaCUGGUc -3'
miRNA:   3'- gaCCA------CCAGGAgGUCCAGGagGACCA- -5'
31677 5' -60 NC_006883.1 + 21801 1.06 0.003289
Target:  5'- gCUGGUGGUCCUCCAGGUCCUCCUGGUc -3'
miRNA:   3'- -GACCACCAGGAGGUCCAGGAGGACCA- -5'
31677 5' -60 NC_006883.1 + 21831 0.77 0.286114
Target:  5'- --aGUGGUCCUCCAGGUCCgagUGGUg -3'
miRNA:   3'- gacCACCAGGAGGUCCAGGaggACCA- -5'
31677 5' -60 NC_006883.1 + 21867 0.7 0.642176
Target:  5'- gCUGGUccaagugguucaccuGGUCCUCCAGGUCCUa----- -3'
miRNA:   3'- -GACCA---------------CCAGGAGGUCCAGGAggacca -5'
31677 5' -60 NC_006883.1 + 21904 0.93 0.028057
Target:  5'- gUGGUGGUCCUCCAGGUCCuagugguggUCCUGGUc -3'
miRNA:   3'- gACCACCAGGAGGUCCAGG---------AGGACCA- -5'
31677 5' -60 NC_006883.1 + 21939 0.68 0.761027
Target:  5'- cCUGcUGGUCCUCCAGGUCagauggUCCa--- -3'
miRNA:   3'- -GACcACCAGGAGGUCCAGg-----AGGacca -5'
31677 5' -60 NC_006883.1 + 21968 0.8 0.198512
Target:  5'- --aGUGGUCCUCCuGGUCCUgCUGGa -3'
miRNA:   3'- gacCACCAGGAGGuCCAGGAgGACCa -5'
31677 5' -60 NC_006883.1 + 22884 0.68 0.733618
Target:  5'- aCUGGUccugcuGGUgCUCCAGGUuuaacuggaCCUgCUGGUc -3'
miRNA:   3'- -GACCA------CCAgGAGGUCCA---------GGAgGACCA- -5'
31677 5' -60 NC_006883.1 + 22938 0.8 0.180608
Target:  5'- --aGUGGUCCUCCuGGUCC-CCUGGUc -3'
miRNA:   3'- gacCACCAGGAGGuCCAGGaGGACCA- -5'
31677 5' -60 NC_006883.1 + 22964 0.93 0.027339
Target:  5'- gCUGGUGGUCCUCCAGGUCCaaCUGGUc -3'
miRNA:   3'- -GACCACCAGGAGGUCCAGGagGACCA- -5'
31677 5' -60 NC_006883.1 + 22994 0.76 0.308265
Target:  5'- gCUGGUgaugauggugcuccuGGUCCUCaAGGUCCUCCaGGUa -3'
miRNA:   3'- -GACCA---------------CCAGGAGgUCCAGGAGGaCCA- -5'
31677 5' -60 NC_006883.1 + 23038 0.7 0.628634
Target:  5'- -cGGUGGUCCaaCuGGUCCUCaaGGUn -3'
miRNA:   3'- gaCCACCAGGagGuCCAGGAGgaCCA- -5'
31677 5' -60 NC_006883.1 + 23063 0.77 0.279842
Target:  5'- cCUGcUGGUUCUCCAGGUCCaaCUGGUc -3'
miRNA:   3'- -GACcACCAGGAGGUCCAGGagGACCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.