miRNA display CGI


Results 1 - 20 of 59 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31677 5' -60 NC_006883.1 + 22938 0.8 0.180608
Target:  5'- --aGUGGUCCUCCuGGUCC-CCUGGUc -3'
miRNA:   3'- gacCACCAGGAGGuCCAGGaGGACCA- -5'
31677 5' -60 NC_006883.1 + 21621 0.87 0.068942
Target:  5'- gCUGGUGGUCCUCCAGGUCCgcaaggUCCgcaaGGUg -3'
miRNA:   3'- -GACCACCAGGAGGUCCAGG------AGGa---CCA- -5'
31677 5' -60 NC_006883.1 + 24729 0.86 0.082286
Target:  5'- gUGGUccuagcGGUCCUCCAGGUCCUCCaGGUc -3'
miRNA:   3'- gACCA------CCAGGAGGUCCAGGAGGaCCA- -5'
31677 5' -60 NC_006883.1 + 23414 0.83 0.116695
Target:  5'- cCUGGUccugcuGGUCCUCCAGGUCCaUCUGGUc -3'
miRNA:   3'- -GACCA------CCAGGAGGUCCAGGaGGACCA- -5'
31677 5' -60 NC_006883.1 + 26429 0.83 0.122593
Target:  5'- aCUGGUacuccaGGUCCagCAGGUCCUCCUGGa -3'
miRNA:   3'- -GACCA------CCAGGagGUCCAGGAGGACCa -5'
31677 5' -60 NC_006883.1 + 21577 0.82 0.131962
Target:  5'- gUGGUGGUCCUgguccuacuggaCCugcuGGUCCUCCUGGUc -3'
miRNA:   3'- gACCACCAGGA------------GGu---CCAGGAGGACCA- -5'
31677 5' -60 NC_006883.1 + 27980 0.82 0.131962
Target:  5'- aCUGGUggagauGGUCCUCCAGGUCCaaCUGGUc -3'
miRNA:   3'- -GACCA------CCAGGAGGUCCAGGagGACCA- -5'
31677 5' -60 NC_006883.1 + 27825 0.82 0.141987
Target:  5'- cCUGcUGGUCCUCCAGGUCCaaCUGGUc -3'
miRNA:   3'- -GACcACCAGGAGGUCCAGGagGACCA- -5'
31677 5' -60 NC_006883.1 + 21459 0.81 0.156436
Target:  5'- aCUGGUccugcuGGUCCUCCAGGUCCaaCUGGa -3'
miRNA:   3'- -GACCA------CCAGGAGGUCCAGGagGACCa -5'
31677 5' -60 NC_006883.1 + 28136 0.87 0.062278
Target:  5'- --aGUGGUCCUCCAGGUCCUCCaGGUu -3'
miRNA:   3'- gacCACCAGGAGGUCCAGGAGGaCCA- -5'
31677 5' -60 NC_006883.1 + 21693 0.88 0.057693
Target:  5'- aCUGGaucuccUGGUCCUgCAGGUCCUCCUGGUc -3'
miRNA:   3'- -GACC------ACCAGGAgGUCCAGGAGGACCA- -5'
31677 5' -60 NC_006883.1 + 28040 0.88 0.05482
Target:  5'- aCUGGUgaugauGGUCCUCCAGGUCCUCCaGGUc -3'
miRNA:   3'- -GACCA------CCAGGAGGUCCAGGAGGaCCA- -5'
31677 5' -60 NC_006883.1 + 222792 0.95 0.018035
Target:  5'- cCUGuUGGUCCUCCAGGUCCUCCUGGUc -3'
miRNA:   3'- -GACcACCAGGAGGUCCAGGAGGACCA- -5'
31677 5' -60 NC_006883.1 + 27372 0.93 0.025556
Target:  5'- aCUGGUacuccagguccagcaGGUCCUCCAGGUCCUCCUGGa -3'
miRNA:   3'- -GACCA---------------CCAGGAGGUCCAGGAGGACCa -5'
31677 5' -60 NC_006883.1 + 22964 0.93 0.027339
Target:  5'- gCUGGUGGUCCUCCAGGUCCaaCUGGUc -3'
miRNA:   3'- -GACCACCAGGAGGUCCAGGagGACCA- -5'
31677 5' -60 NC_006883.1 + 21904 0.93 0.028057
Target:  5'- gUGGUGGUCCUCCAGGUCCuagugguggUCCUGGUc -3'
miRNA:   3'- gACCACCAGGAGGUCCAGG---------AGGACCA- -5'
31677 5' -60 NC_006883.1 + 21495 0.91 0.035414
Target:  5'- aCUGGUccuucuGGUCCUCCAGGUCCUUCUGGUc -3'
miRNA:   3'- -GACCA------CCAGGAGGUCCAGGAGGACCA- -5'
31677 5' -60 NC_006883.1 + 26711 0.91 0.038265
Target:  5'- cCUGcUGGUUCUCCAGGUCCUCCUGGUu -3'
miRNA:   3'- -GACcACCAGGAGGUCCAGGAGGACCA- -5'
31677 5' -60 NC_006883.1 + 27301 0.91 0.038661
Target:  5'- gUGGUggcacagguccagcaGGUCCUCCAGGUCCUCCUGGa -3'
miRNA:   3'- gACCA---------------CCAGGAGGUCCAGGAGGACCa -5'
31677 5' -60 NC_006883.1 + 28082 0.89 0.052086
Target:  5'- aCUGGUccugcuGGUCCUCCAGGaCCUCCUGGUg -3'
miRNA:   3'- -GACCA------CCAGGAGGUCCaGGAGGACCA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.