miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31678 3' -56.4 NC_006883.1 + 21896 1.14 0.002603
Target:  5'- aGGUCCUAGUGGUGGUCCUCCAGGUCCu -3'
miRNA:   3'- -CCAGGAUCACCACCAGGAGGUCCAGG- -5'
31678 3' -56.4 NC_006883.1 + 21614 1.03 0.012739
Target:  5'- uGGUCCUGcUGGUGGUCCUCCAGGUCCg -3'
miRNA:   3'- -CCAGGAUcACCACCAGGAGGUCCAGG- -5'
31678 3' -56.4 NC_006883.1 + 22957 1.03 0.012739
Target:  5'- uGGUCCUGcUGGUGGUCCUCCAGGUCCa -3'
miRNA:   3'- -CCAGGAUcACCACCAGGAGGUCCAGG- -5'
31678 3' -56.4 NC_006883.1 + 21794 1.02 0.014534
Target:  5'- uGGUCCUGcUGGUGGUCCUCCAGGUCCu -3'
miRNA:   3'- -CCAGGAUcACCACCAGGAGGUCCAGG- -5'
31678 3' -56.4 NC_006883.1 + 28270 0.97 0.031127
Target:  5'- aGGUCCUucaGGUGGaagUGGUCCUCCAGGUCCa -3'
miRNA:   3'- -CCAGGA---UCACC---ACCAGGAGGUCCAGG- -5'
31678 3' -56.4 NC_006883.1 + 27257 0.97 0.031127
Target:  5'- aGGUCCUacaGGUGGagaUGGUCCUCCAGGUCCa -3'
miRNA:   3'- -CCAGGA---UCACC---ACCAGGAGGUCCAGG- -5'
31678 3' -56.4 NC_006883.1 + 27973 0.97 0.032796
Target:  5'- uGGUCCUacuGGUGGagaUGGUCCUCCAGGUCCa -3'
miRNA:   3'- -CCAGGA---UCACC---ACCAGGAGGUCCAGG- -5'
31678 3' -56.4 NC_006883.1 + 24730 0.94 0.046001
Target:  5'- uGGUCCUAGcGGUccuccaGGUCCUCCAGGUCCa -3'
miRNA:   3'- -CCAGGAUCaCCA------CCAGGAGGUCCAGG- -5'
31678 3' -56.4 NC_006883.1 + 222776 0.94 0.049719
Target:  5'- uGGUCCUucuGGUGGUccuguuGGUCCUCCAGGUCCu -3'
miRNA:   3'- -CCAGGA---UCACCA------CCAGGAGGUCCAGG- -5'
31678 3' -56.4 NC_006883.1 + 27293 0.92 0.063359
Target:  5'- uGGUCCaGGUGGUggcacagguccagcaGGUCCUCCAGGUCCu -3'
miRNA:   3'- -CCAGGaUCACCA---------------CCAGGAGGUCCAGG- -5'
31678 3' -56.4 NC_006883.1 + 23398 0.92 0.063359
Target:  5'- uGGUgCUGGUGGUggaccugguccugcuGGUCCUCCAGGUCCa -3'
miRNA:   3'- -CCAgGAUCACCA---------------CCAGGAGGUCCAGG- -5'
31678 3' -56.4 NC_006883.1 + 21452 0.92 0.064343
Target:  5'- uGGUCCUAcUGGUccugcuGGUCCUCCAGGUCCa -3'
miRNA:   3'- -CCAGGAUcACCA------CCAGGAGGUCCAGG- -5'
31678 3' -56.4 NC_006883.1 + 28033 0.91 0.073137
Target:  5'- uGGUCCUAcUGGUgaugauGGUCCUCCAGGUCCu -3'
miRNA:   3'- -CCAGGAUcACCA------CCAGGAGGUCCAGG- -5'
31678 3' -56.4 NC_006883.1 + 28201 0.9 0.085215
Target:  5'- aGGUCCUacuGGUGGagaUGGUCCUCCuGGUCCa -3'
miRNA:   3'- -CCAGGA---UCACC---ACCAGGAGGuCCAGG- -5'
31678 3' -56.4 NC_006883.1 + 21820 0.89 0.0943
Target:  5'- -cUCCUGGUccaaGUGGUCCUCCAGGUCCg -3'
miRNA:   3'- ccAGGAUCAc---CACCAGGAGGUCCAGG- -5'
31678 3' -56.4 NC_006883.1 + 26413 0.87 0.133803
Target:  5'- aGGUCCaGGUGGUGGaacugguaCUCCAGGUCCa -3'
miRNA:   3'- -CCAGGaUCACCACCag------GAGGUCCAGG- -5'
31678 3' -56.4 NC_006883.1 + 21929 0.87 0.137144
Target:  5'- uGGUCCUGGUccuGcUGGUCCUCCAGGUCa -3'
miRNA:   3'- -CCAGGAUCA---CcACCAGGAGGUCCAGg -5'
31678 3' -56.4 NC_006883.1 + 27821 0.86 0.158849
Target:  5'- aGGUCCUGc---UGGUCCUCCAGGUCCa -3'
miRNA:   3'- -CCAGGAUcaccACCAGGAGGUCCAGG- -5'
31678 3' -56.4 NC_006883.1 + 21497 0.83 0.221876
Target:  5'- uGGUCCUuc---UGGUCCUCCAGGUCCu -3'
miRNA:   3'- -CCAGGAucaccACCAGGAGGUCCAGG- -5'
31678 3' -56.4 NC_006883.1 + 26485 0.83 0.221876
Target:  5'- uGGUCCUGcUGGUgcaacuGGUCCUgCAGGUCCa -3'
miRNA:   3'- -CCAGGAUcACCA------CCAGGAgGUCCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.