miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31678 3' -56.4 NC_006883.1 + 21130 0.7 0.848527
Target:  5'- gGGuUCCUguuGGUGGUGGauuaaUUCCAGGUgCg -3'
miRNA:   3'- -CC-AGGA---UCACCACCag---GAGGUCCAgG- -5'
31678 3' -56.4 NC_006883.1 + 21452 0.92 0.064343
Target:  5'- uGGUCCUAcUGGUccugcuGGUCCUCCAGGUCCa -3'
miRNA:   3'- -CCAGGAUcACCA------CCAGGAGGUCCAGG- -5'
31678 3' -56.4 NC_006883.1 + 21497 0.83 0.221876
Target:  5'- uGGUCCUuc---UGGUCCUCCAGGUCCu -3'
miRNA:   3'- -CCAGGAucaccACCAGGAGGUCCAGG- -5'
31678 3' -56.4 NC_006883.1 + 21524 0.74 0.64112
Target:  5'- uGGUCCaGGUGGcGGUCCU---GGUCCu -3'
miRNA:   3'- -CCAGGaUCACCaCCAGGAgguCCAGG- -5'
31678 3' -56.4 NC_006883.1 + 21569 0.82 0.249104
Target:  5'- uGGUCCgAGUGGUGGUCCUgguccuacuggaCCugcuGGUCCu -3'
miRNA:   3'- -CCAGGaUCACCACCAGGA------------GGu---CCAGG- -5'
31678 3' -56.4 NC_006883.1 + 21614 1.03 0.012739
Target:  5'- uGGUCCUGcUGGUGGUCCUCCAGGUCCg -3'
miRNA:   3'- -CCAGGAUcACCACCAGGAGGUCCAGG- -5'
31678 3' -56.4 NC_006883.1 + 21644 0.74 0.611826
Target:  5'- aGGUCCgcaaGGUGaugcUGGUCCaaCAGGUCCa -3'
miRNA:   3'- -CCAGGa---UCACc---ACCAGGagGUCCAGG- -5'
31678 3' -56.4 NC_006883.1 + 21680 0.77 0.452585
Target:  5'- uGGUCCUccUGGUacuggaucuccuGGUCCUgCAGGUCCu -3'
miRNA:   3'- -CCAGGAucACCA------------CCAGGAgGUCCAGG- -5'
31678 3' -56.4 NC_006883.1 + 21722 0.74 0.631353
Target:  5'- uGGUCCaAGUGGaGGUCCU---GGUCCa -3'
miRNA:   3'- -CCAGGaUCACCaCCAGGAgguCCAGG- -5'
31678 3' -56.4 NC_006883.1 + 21749 0.78 0.430134
Target:  5'- uGGUCCUGcUGGUccuacggguccagacGGUCCUaCAGGUCCa -3'
miRNA:   3'- -CCAGGAUcACCA---------------CCAGGAgGUCCAGG- -5'
31678 3' -56.4 NC_006883.1 + 21794 1.02 0.014534
Target:  5'- uGGUCCUGcUGGUGGUCCUCCAGGUCCu -3'
miRNA:   3'- -CCAGGAUcACCACCAGGAGGUCCAGG- -5'
31678 3' -56.4 NC_006883.1 + 21820 0.89 0.0943
Target:  5'- -cUCCUGGUccaaGUGGUCCUCCAGGUCCg -3'
miRNA:   3'- ccAGGAUCAc---CACCAGGAGGUCCAGG- -5'
31678 3' -56.4 NC_006883.1 + 21860 0.69 0.890662
Target:  5'- uGGUCCUGcUGGUccaaguGGUUCaCCuGGUCCu -3'
miRNA:   3'- -CCAGGAUcACCA------CCAGGaGGuCCAGG- -5'
31678 3' -56.4 NC_006883.1 + 21896 1.14 0.002603
Target:  5'- aGGUCCUAGUGGUGGUCCUCCAGGUCCu -3'
miRNA:   3'- -CCAGGAUCACCACCAGGAGGUCCAGG- -5'
31678 3' -56.4 NC_006883.1 + 21929 0.87 0.137144
Target:  5'- uGGUCCUGGUccuGcUGGUCCUCCAGGUCa -3'
miRNA:   3'- -CCAGGAUCA---CcACCAGGAGGUCCAGg -5'
31678 3' -56.4 NC_006883.1 + 21961 0.78 0.435257
Target:  5'- uGGUCCaa---GUGGUCCUCCuGGUCCu -3'
miRNA:   3'- -CCAGGaucacCACCAGGAGGuCCAGG- -5'
31678 3' -56.4 NC_006883.1 + 22886 0.69 0.884134
Target:  5'- uGGUCCUGcUGGUG---CUCCAGGUUUa -3'
miRNA:   3'- -CCAGGAUcACCACcagGAGGUCCAGG- -5'
31678 3' -56.4 NC_006883.1 + 22922 0.83 0.227111
Target:  5'- uGGUCCUGaUGGUccaaguGGUCCUCCuGGUCCc -3'
miRNA:   3'- -CCAGGAUcACCA------CCAGGAGGuCCAGG- -5'
31678 3' -56.4 NC_006883.1 + 22957 1.03 0.012739
Target:  5'- uGGUCCUGcUGGUGGUCCUCCAGGUCCa -3'
miRNA:   3'- -CCAGGAUcACCACCAGGAGGUCCAGG- -5'
31678 3' -56.4 NC_006883.1 + 22987 0.78 0.447347
Target:  5'- uGGUCCUGcUGGUgaugauggugcuccuGGUCCUCaAGGUCCu -3'
miRNA:   3'- -CCAGGAUcACCA---------------CCAGGAGgUCCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.