miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31678 5' -59.6 NC_006883.1 + 21459 1.09 0.002348
Target:  5'- aCUGGUCCUGCUGGUCCUCCAGGUCCAa -3'
miRNA:   3'- -GACCAGGACGACCAGGAGGUCCAGGU- -5'
31678 5' -59.6 NC_006883.1 + 23414 1.08 0.00261
Target:  5'- cCUGGUCCUGCUGGUCCUCCAGGUCCAu -3'
miRNA:   3'- -GACCAGGACGACCAGGAGGUCCAGGU- -5'
31678 5' -59.6 NC_006883.1 + 27821 1.04 0.004918
Target:  5'- -aGGUCCUGCUGGUCCUCCAGGUCCAa -3'
miRNA:   3'- gaCCAGGACGACCAGGAGGUCCAGGU- -5'
31678 5' -59.6 NC_006883.1 + 21933 1.01 0.008114
Target:  5'- cCUGGUCCUGCUGGUCCUCCAGGUCa- -3'
miRNA:   3'- -GACCAGGACGACCAGGAGGUCCAGgu -5'
31678 5' -59.6 NC_006883.1 + 22955 0.99 0.010016
Target:  5'- cCUGGUCCUGCuggUGGUCCUCCAGGUCCAa -3'
miRNA:   3'- -GACCAGGACG---ACCAGGAGGUCCAGGU- -5'
31678 5' -59.6 NC_006883.1 + 26519 0.99 0.010283
Target:  5'- aCUGGUCCUGCUGGUCCaCCAGGUCCAa -3'
miRNA:   3'- -GACCAGGACGACCAGGaGGUCCAGGU- -5'
31678 5' -59.6 NC_006883.1 + 23059 0.99 0.010557
Target:  5'- -aGGUCCUGCUGGUUCUCCAGGUCCAa -3'
miRNA:   3'- gaCCAGGACGACCAGGAGGUCCAGGU- -5'
31678 5' -59.6 NC_006883.1 + 222787 0.99 0.010557
Target:  5'- gUGGUCCUGUUGGUCCUCCAGGUCCu -3'
miRNA:   3'- gACCAGGACGACCAGGAGGUCCAGGu -5'
31678 5' -59.6 NC_006883.1 + 21612 0.98 0.013027
Target:  5'- cCUGGUCCUGCuggUGGUCCUCCAGGUCCGc -3'
miRNA:   3'- -GACCAGGACG---ACCAGGAGGUCCAGGU- -5'
31678 5' -59.6 NC_006883.1 + 28082 0.97 0.01373
Target:  5'- aCUGGUCCUGCUGGUCCUCCAGGaCCu -3'
miRNA:   3'- -GACCAGGACGACCAGGAGGUCCaGGu -5'
31678 5' -59.6 NC_006883.1 + 21792 0.97 0.014855
Target:  5'- aCUGGUCCUGCuggUGGUCCUCCAGGUCCu -3'
miRNA:   3'- -GACCAGGACG---ACCAGGAGGUCCAGGu -5'
31678 5' -59.6 NC_006883.1 + 26707 0.96 0.016499
Target:  5'- -aGGUCCUGCUGGUUCUCCAGGUCCu -3'
miRNA:   3'- gaCCAGGACGACCAGGAGGUCCAGGu -5'
31678 5' -59.6 NC_006883.1 + 21747 0.96 0.016937
Target:  5'- aCUGGUCCUGCUGGUCCUaCGGGUCCAg -3'
miRNA:   3'- -GACCAGGACGACCAGGAgGUCCAGGU- -5'
31678 5' -59.6 NC_006883.1 + 21495 0.95 0.020885
Target:  5'- aCUGGUCCUuCUGGUCCUCCAGGUCCu -3'
miRNA:   3'- -GACCAGGAcGACCAGGAGGUCCAGGu -5'
31678 5' -59.6 NC_006883.1 + 21702 0.94 0.023188
Target:  5'- cCUGGUCCUGCaGGUCCUCCuGGUCCAa -3'
miRNA:   3'- -GACCAGGACGaCCAGGAGGuCCAGGU- -5'
31678 5' -59.6 NC_006883.1 + 23441 0.92 0.029325
Target:  5'- uCUGGUCCaGCaGGUCCUCCAGGUCCAg -3'
miRNA:   3'- -GACCAGGaCGaCCAGGAGGUCCAGGU- -5'
31678 5' -59.6 NC_006883.1 + 22884 0.92 0.030099
Target:  5'- aCUGGUCCUGCUGGUgCUCCAGGUUUAa -3'
miRNA:   3'- -GACCAGGACGACCAgGAGGUCCAGGU- -5'
31678 5' -59.6 NC_006883.1 + 222648 0.88 0.062069
Target:  5'- aCUGGUCCUGCUGGUCCuacugguucUCCuGGUCCu -3'
miRNA:   3'- -GACCAGGACGACCAGG---------AGGuCCAGGu -5'
31678 5' -59.6 NC_006883.1 + 24729 0.87 0.065327
Target:  5'- gUGGUCCUaGC-GGUCCUCCAGGUCCu -3'
miRNA:   3'- gACCAGGA-CGaCCAGGAGGUCCAGGu -5'
31678 5' -59.6 NC_006883.1 + 28050 0.87 0.065327
Target:  5'- aUGGUCCUcCaGGUCCUCCAGGUCCAg -3'
miRNA:   3'- gACCAGGAcGaCCAGGAGGUCCAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.