Results 1 - 20 of 65 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31678 | 5' | -59.6 | NC_006883.1 | + | 21459 | 1.09 | 0.002348 |
Target: 5'- aCUGGUCCUGCUGGUCCUCCAGGUCCAa -3' miRNA: 3'- -GACCAGGACGACCAGGAGGUCCAGGU- -5' |
|||||||
31678 | 5' | -59.6 | NC_006883.1 | + | 21495 | 0.95 | 0.020885 |
Target: 5'- aCUGGUCCUuCUGGUCCUCCAGGUCCu -3' miRNA: 3'- -GACCAGGAcGACCAGGAGGUCCAGGu -5' |
|||||||
31678 | 5' | -59.6 | NC_006883.1 | + | 21540 | 0.81 | 0.159783 |
Target: 5'- cCUGGUCCUGCUGGcCCUCaaggugauguuGGUCCGa -3' miRNA: 3'- -GACCAGGACGACCaGGAGgu---------CCAGGU- -5' |
|||||||
31678 | 5' | -59.6 | NC_006883.1 | + | 21585 | 0.71 | 0.555672 |
Target: 5'- cCUGGUCCUaCUGGaCCUgCuGGUCCu -3' miRNA: 3'- -GACCAGGAcGACCaGGAgGuCCAGGu -5' |
|||||||
31678 | 5' | -59.6 | NC_006883.1 | + | 21612 | 0.98 | 0.013027 |
Target: 5'- cCUGGUCCUGCuggUGGUCCUCCAGGUCCGc -3' miRNA: 3'- -GACCAGGACG---ACCAGGAGGUCCAGGU- -5' |
|||||||
31678 | 5' | -59.6 | NC_006883.1 | + | 21644 | 0.79 | 0.229115 |
Target: 5'- -aGGUCCgcaaggugaUGCUGGUCCaaCAGGUCCAa -3' miRNA: 3'- gaCCAGG---------ACGACCAGGagGUCCAGGU- -5' |
|||||||
31678 | 5' | -59.6 | NC_006883.1 | + | 21702 | 0.94 | 0.023188 |
Target: 5'- cCUGGUCCUGCaGGUCCUCCuGGUCCAa -3' miRNA: 3'- -GACCAGGACGaCCAGGAGGuCCAGGU- -5' |
|||||||
31678 | 5' | -59.6 | NC_006883.1 | + | 21747 | 0.96 | 0.016937 |
Target: 5'- aCUGGUCCUGCUGGUCCUaCGGGUCCAg -3' miRNA: 3'- -GACCAGGACGACCAGGAgGUCCAGGU- -5' |
|||||||
31678 | 5' | -59.6 | NC_006883.1 | + | 21792 | 0.97 | 0.014855 |
Target: 5'- aCUGGUCCUGCuggUGGUCCUCCAGGUCCu -3' miRNA: 3'- -GACCAGGACG---ACCAGGAGGUCCAGGu -5' |
|||||||
31678 | 5' | -59.6 | NC_006883.1 | + | 21822 | 0.86 | 0.07612 |
Target: 5'- cCUGGUCCaagUGGUCCUCCAGGUCCGa -3' miRNA: 3'- -GACCAGGacgACCAGGAGGUCCAGGU- -5' |
|||||||
31678 | 5' | -59.6 | NC_006883.1 | + | 21859 | 0.74 | 0.420504 |
Target: 5'- aUGGUCCUGCUGGUCCaa-GuGGUUCAn -3' miRNA: 3'- gACCAGGACGACCAGGaggU-CCAGGU- -5' |
|||||||
31678 | 5' | -59.6 | NC_006883.1 | + | 21885 | 0.86 | 0.082139 |
Target: 5'- cCUGGUCCuccagguccuagUGgUGGUCCUCCAGGUCCu -3' miRNA: 3'- -GACCAGG------------ACgACCAGGAGGUCCAGGu -5' |
|||||||
31678 | 5' | -59.6 | NC_006883.1 | + | 21933 | 1.01 | 0.008114 |
Target: 5'- cCUGGUCCUGCUGGUCCUCCAGGUCa- -3' miRNA: 3'- -GACCAGGACGACCAGGAGGUCCAGgu -5' |
|||||||
31678 | 5' | -59.6 | NC_006883.1 | + | 21960 | 0.76 | 0.334955 |
Target: 5'- aUGGUCCaagUGGUCCUCCuGGUCCu -3' miRNA: 3'- gACCAGGacgACCAGGAGGuCCAGGu -5' |
|||||||
31678 | 5' | -59.6 | NC_006883.1 | + | 22884 | 0.92 | 0.030099 |
Target: 5'- aCUGGUCCUGCUGGUgCUCCAGGUUUAa -3' miRNA: 3'- -GACCAGGACGACCAgGAGGUCCAGGU- -5' |
|||||||
31678 | 5' | -59.6 | NC_006883.1 | + | 22911 | 0.8 | 0.185441 |
Target: 5'- aCUGGaCCUGCUGGUCCUgauGGUCCAa -3' miRNA: 3'- -GACCaGGACGACCAGGAgguCCAGGU- -5' |
|||||||
31678 | 5' | -59.6 | NC_006883.1 | + | 22955 | 0.99 | 0.010016 |
Target: 5'- cCUGGUCCUGCuggUGGUCCUCCAGGUCCAa -3' miRNA: 3'- -GACCAGGACG---ACCAGGAGGUCCAGGU- -5' |
|||||||
31678 | 5' | -59.6 | NC_006883.1 | + | 22985 | 0.8 | 0.199118 |
Target: 5'- aCUGGUCCUGCuggugaugaUGGUgCUCCuGGUCCu -3' miRNA: 3'- -GACCAGGACG---------ACCAgGAGGuCCAGGu -5' |
|||||||
31678 | 5' | -59.6 | NC_006883.1 | + | 23059 | 0.99 | 0.010557 |
Target: 5'- -aGGUCCUGCUGGUUCUCCAGGUCCAa -3' miRNA: 3'- gaCCAGGACGACCAGGAGGUCCAGGU- -5' |
|||||||
31678 | 5' | -59.6 | NC_006883.1 | + | 23084 | 0.87 | 0.065327 |
Target: 5'- aCUGGUCCUGUaGGUCCuucaaaUCCAGGUCCAa -3' miRNA: 3'- -GACCAGGACGaCCAGG------AGGUCCAGGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home