miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31679 3' -53.9 NC_006883.1 + 23144 0.72 0.85102
Target:  5'- aCUGGaCCaGAUGGUCCuacaGGUCCa -3'
miRNA:   3'- cGACCaGGaCUACCAGGuucaCCAGG- -5'
31679 3' -53.9 NC_006883.1 + 23396 0.66 0.984782
Target:  5'- uCUGGUgCUGGUGGUggaCC---UGGUCCn -3'
miRNA:   3'- cGACCAgGACUACCA---GGuucACCAGG- -5'
31679 3' -53.9 NC_006883.1 + 23422 0.81 0.387151
Target:  5'- uGCUGGUCCUccaGGUCCAucUGGUCCa -3'
miRNA:   3'- -CGACCAGGAcuaCCAGGUucACCAGG- -5'
31679 3' -53.9 NC_006883.1 + 23433 0.69 0.946724
Target:  5'- cCUGGaCCUGGUGGaCCuguAGgaccaucUGGUCCa -3'
miRNA:   3'- cGACCaGGACUACCaGGu--UC-------ACCAGG- -5'
31679 3' -53.9 NC_006883.1 + 23449 0.71 0.887058
Target:  5'- aGCaGGUCCUccaGGUCCAGcaGGUCCu -3'
miRNA:   3'- -CGaCCAGGAcuaCCAGGUUcaCCAGG- -5'
31679 3' -53.9 NC_006883.1 + 23650 0.76 0.639197
Target:  5'- aGCaGGUCCUacaGGUCCAAcUGGUCCa -3'
miRNA:   3'- -CGaCCAGGAcuaCCAGGUUcACCAGG- -5'
31679 3' -53.9 NC_006883.1 + 24685 0.85 0.24755
Target:  5'- --aGGUCCUacaGGUCCAAGUGGUCCa -3'
miRNA:   3'- cgaCCAGGAcuaCCAGGUUCACCAGG- -5'
31679 3' -53.9 NC_006883.1 + 24712 0.87 0.185607
Target:  5'- --aGGUCCaaGUGGUCCAAGUGGUCCu -3'
miRNA:   3'- cgaCCAGGacUACCAGGUUCACCAGG- -5'
31679 3' -53.9 NC_006883.1 + 26275 0.71 0.887058
Target:  5'- aGCaGGUCCUacaGGUCCAGcaGGUCCu -3'
miRNA:   3'- -CGaCCAGGAcuaCCAGGUUcaCCAGG- -5'
31679 3' -53.9 NC_006883.1 + 26365 0.82 0.340324
Target:  5'- uGCUGGUCCcacaggugGAacUGGUCCAAcUGGUCCa -3'
miRNA:   3'- -CGACCAGGa-------CU--ACCAGGUUcACCAGG- -5'
31679 3' -53.9 NC_006883.1 + 26404 0.73 0.810274
Target:  5'- --cGGUCCUccaGGUCCAGGUGGUg- -3'
miRNA:   3'- cgaCCAGGAcuaCCAGGUUCACCAgg -5'
31679 3' -53.9 NC_006883.1 + 26501 0.84 0.278044
Target:  5'- aCUGGUCCUGcaGGUCCAAcUGGUCCu -3'
miRNA:   3'- cGACCAGGACuaCCAGGUUcACCAGG- -5'
31679 3' -53.9 NC_006883.1 + 26527 0.8 0.42928
Target:  5'- uGCUGGUCCaccaGGUCCAAcUGGUCCu -3'
miRNA:   3'- -CGACCAGGacuaCCAGGUUcACCAGG- -5'
31679 3' -53.9 NC_006883.1 + 26572 0.66 0.984782
Target:  5'- uGCUGGUCUaGAuauUGGaacuucagcUCCAucUGGUCCu -3'
miRNA:   3'- -CGACCAGGaCU---ACC---------AGGUucACCAGG- -5'
31679 3' -53.9 NC_006883.1 + 26707 0.69 0.947147
Target:  5'- --aGGUCCUGcUGGUUCuccaGGUCCu -3'
miRNA:   3'- cgaCCAGGACuACCAGGuucaCCAGG- -5'
31679 3' -53.9 NC_006883.1 + 26800 0.66 0.986439
Target:  5'- aGUUGGaCCUGGUGGaCCAGcaGGaCCa -3'
miRNA:   3'- -CGACCaGGACUACCaGGUUcaCCaGG- -5'
31679 3' -53.9 NC_006883.1 + 27219 0.74 0.747004
Target:  5'- cCUGGUCCUacaGGUCCAGcaGGUCCu -3'
miRNA:   3'- cGACCAGGAcuaCCAGGUUcaCCAGG- -5'
31679 3' -53.9 NC_006883.1 + 27274 0.87 0.194887
Target:  5'- -aUGGUCCUccaGGUCCAGGUGGUCCa -3'
miRNA:   3'- cgACCAGGAcuaCCAGGUUCACCAGG- -5'
31679 3' -53.9 NC_006883.1 + 27355 0.74 0.747004
Target:  5'- -aUGGUUCUGAUGGuggaacugguacUCCAGGUccagcaGGUCCu -3'
miRNA:   3'- cgACCAGGACUACC------------AGGUUCA------CCAGG- -5'
31679 3' -53.9 NC_006883.1 + 27446 0.73 0.801633
Target:  5'- --aGGUCCUacUGGUCCGAcaGGUCCc -3'
miRNA:   3'- cgaCCAGGAcuACCAGGUUcaCCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.