miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31679 3' -53.9 NC_006883.1 + 21459 0.81 0.387151
Target:  5'- aCUGGUCCUGcUGGUCCuccaGGUCCa -3'
miRNA:   3'- cGACCAGGACuACCAGGuucaCCAGG- -5'
31679 3' -53.9 NC_006883.1 + 21515 0.79 0.49252
Target:  5'- --aGGUCCUucUGGUCCAGGUggcGGUCCu -3'
miRNA:   3'- cgaCCAGGAcuACCAGGUUCA---CCAGG- -5'
31679 3' -53.9 NC_006883.1 + 21566 0.79 0.49252
Target:  5'- uGUUGGUCCgagUGGUGGUCC---UGGUCCu -3'
miRNA:   3'- -CGACCAGG---ACUACCAGGuucACCAGG- -5'
31679 3' -53.9 NC_006883.1 + 21602 0.89 0.134316
Target:  5'- uGCUGGUCCUccUGGUCCugcuGGUGGUCCu -3'
miRNA:   3'- -CGACCAGGAcuACCAGGu---UCACCAGG- -5'
31679 3' -53.9 NC_006883.1 + 21659 0.8 0.42928
Target:  5'- uGCUGGUCCaacaGGUCCAAcUGGUCCu -3'
miRNA:   3'- -CGACCAGGacuaCCAGGUUcACCAGG- -5'
31679 3' -53.9 NC_006883.1 + 21702 0.81 0.379057
Target:  5'- cCUGGUCCUGcagguccuccUGGUCCAAGUggaGGUCCu -3'
miRNA:   3'- cGACCAGGACu---------ACCAGGUUCA---CCAGG- -5'
31679 3' -53.9 NC_006883.1 + 21747 0.83 0.304539
Target:  5'- aCUGGUCCUGcUGGUCCuacgGGUCCa -3'
miRNA:   3'- cGACCAGGACuACCAGGuucaCCAGG- -5'
31679 3' -53.9 NC_006883.1 + 21785 0.75 0.718278
Target:  5'- --aGGUCCaacUGGUCCugcuGGUGGUCCu -3'
miRNA:   3'- cgaCCAGGacuACCAGGu---UCACCAGG- -5'
31679 3' -53.9 NC_006883.1 + 21815 0.88 0.160071
Target:  5'- --aGGUCCUccUGGUCCAAGUGGUCCu -3'
miRNA:   3'- cgaCCAGGAcuACCAGGUUCACCAGG- -5'
31679 3' -53.9 NC_006883.1 + 21859 0.93 0.086888
Target:  5'- -aUGGUCCUGcUGGUCCAAGUGGUUCa -3'
miRNA:   3'- cgACCAGGACuACCAGGUUCACCAGG- -5'
31679 3' -53.9 NC_006883.1 + 21885 0.8 0.42928
Target:  5'- cCUGGUCCUccaGGUCCuaguGGUGGUCCu -3'
miRNA:   3'- cGACCAGGAcuaCCAGGu---UCACCAGG- -5'
31679 3' -53.9 NC_006883.1 + 21917 0.71 0.900004
Target:  5'- --aGGUCCuagUGGUGGUCC---UGGUCCn -3'
miRNA:   3'- cgaCCAGG---ACUACCAGGuucACCAGG- -5'
31679 3' -53.9 NC_006883.1 + 21941 1.01 0.025722
Target:  5'- uGCUGGUCCUccaggucaGAUGGUCCAAGUGGUCCu -3'
miRNA:   3'- -CGACCAGGA--------CUACCAGGUUCACCAGG- -5'
31679 3' -53.9 NC_006883.1 + 22884 0.66 0.984782
Target:  5'- aCUGGUCCUGcUGGugcUCCAGGUuuaacuGGaCCn -3'
miRNA:   3'- cGACCAGGACuACC---AGGUUCA------CCaGG- -5'
31679 3' -53.9 NC_006883.1 + 22919 1.14 0.004102
Target:  5'- uGCUGGUCCUGAUGGUCCAAGUGGUCCu -3'
miRNA:   3'- -CGACCAGGACUACCAGGUUCACCAGG- -5'
31679 3' -53.9 NC_006883.1 + 22947 0.8 0.438025
Target:  5'- cCUGGUCCcc-UGGUCCugcuGGUGGUCCu -3'
miRNA:   3'- cGACCAGGacuACCAGGu---UCACCAGG- -5'
31679 3' -53.9 NC_006883.1 + 22993 0.68 0.965539
Target:  5'- uGCUGGUgaUGAUGGUgCUcc-UGGUCCu -3'
miRNA:   3'- -CGACCAggACUACCA-GGuucACCAGG- -5'
31679 3' -53.9 NC_006883.1 + 23023 0.78 0.530526
Target:  5'- --aGGUCCUccagguaucGGUGGUCCAAcUGGUCCu -3'
miRNA:   3'- cgaCCAGGA---------CUACCAGGUUcACCAGG- -5'
31679 3' -53.9 NC_006883.1 + 23065 0.78 0.540199
Target:  5'- uGCUGGUUCUccaGGUCCAAcUGGUCCu -3'
miRNA:   3'- -CGACCAGGAcuaCCAGGUUcACCAGG- -5'
31679 3' -53.9 NC_006883.1 + 23095 0.67 0.974108
Target:  5'- --aGGUCCUucaaauccaGGUCCAAcUGGUCCc -3'
miRNA:   3'- cgaCCAGGAcua------CCAGGUUcACCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.