miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31679 3' -53.9 NC_006883.1 + 22919 1.14 0.004102
Target:  5'- uGCUGGUCCUGAUGGUCCAAGUGGUCCu -3'
miRNA:   3'- -CGACCAGGACUACCAGGUUCACCAGG- -5'
31679 3' -53.9 NC_006883.1 + 21941 1.01 0.025722
Target:  5'- uGCUGGUCCUccaggucaGAUGGUCCAAGUGGUCCu -3'
miRNA:   3'- -CGACCAGGA--------CUACCAGGUUCACCAGG- -5'
31679 3' -53.9 NC_006883.1 + 21859 0.93 0.086888
Target:  5'- -aUGGUCCUGcUGGUCCAAGUGGUUCa -3'
miRNA:   3'- cgACCAGGACuACCAGGUUCACCAGG- -5'
31679 3' -53.9 NC_006883.1 + 21602 0.89 0.134316
Target:  5'- uGCUGGUCCUccUGGUCCugcuGGUGGUCCu -3'
miRNA:   3'- -CGACCAGGAcuACCAGGu---UCACCAGG- -5'
31679 3' -53.9 NC_006883.1 + 21815 0.88 0.160071
Target:  5'- --aGGUCCUccUGGUCCAAGUGGUCCu -3'
miRNA:   3'- cgaCCAGGAcuACCAGGUUCACCAGG- -5'
31679 3' -53.9 NC_006883.1 + 24712 0.87 0.185607
Target:  5'- --aGGUCCaaGUGGUCCAAGUGGUCCu -3'
miRNA:   3'- cgaCCAGGacUACCAGGUUCACCAGG- -5'
31679 3' -53.9 NC_006883.1 + 27274 0.87 0.194887
Target:  5'- -aUGGUCCUccaGGUCCAGGUGGUCCa -3'
miRNA:   3'- cgACCAGGAcuaCCAGGUUCACCAGG- -5'
31679 3' -53.9 NC_006883.1 + 222765 0.85 0.230616
Target:  5'- cCUGGUCCUacUGGUCCuucuGGUGGUCCu -3'
miRNA:   3'- cGACCAGGAcuACCAGGu---UCACCAGG- -5'
31679 3' -53.9 NC_006883.1 + 24685 0.85 0.24755
Target:  5'- --aGGUCCUacaGGUCCAAGUGGUCCa -3'
miRNA:   3'- cgaCCAGGAcuaCCAGGUUCACCAGG- -5'
31679 3' -53.9 NC_006883.1 + 26501 0.84 0.278044
Target:  5'- aCUGGUCCUGcaGGUCCAAcUGGUCCu -3'
miRNA:   3'- cGACCAGGACuaCCAGGUUcACCAGG- -5'
31679 3' -53.9 NC_006883.1 + 27827 0.83 0.297738
Target:  5'- uGCUGGUCCUccaGGUCCAAcUGGUCCu -3'
miRNA:   3'- -CGACCAGGAcuaCCAGGUUcACCAGG- -5'
31679 3' -53.9 NC_006883.1 + 21747 0.83 0.304539
Target:  5'- aCUGGUCCUGcUGGUCCuacgGGUCCa -3'
miRNA:   3'- cGACCAGGACuACCAGGuucaCCAGG- -5'
31679 3' -53.9 NC_006883.1 + 26365 0.82 0.340324
Target:  5'- uGCUGGUCCcacaggugGAacUGGUCCAAcUGGUCCa -3'
miRNA:   3'- -CGACCAGGa-------CU--ACCAGGUUcACCAGG- -5'
31679 3' -53.9 NC_006883.1 + 28241 0.82 0.363214
Target:  5'- aCUGGUCCgacUGGUCCAAcUGGUCCa -3'
miRNA:   3'- cGACCAGGacuACCAGGUUcACCAGG- -5'
31679 3' -53.9 NC_006883.1 + 27962 0.82 0.363214
Target:  5'- aCUGGUCCUGcUGGUCCuacuggugGAGaUGGUCCu -3'
miRNA:   3'- cGACCAGGACuACCAGG--------UUC-ACCAGG- -5'
31679 3' -53.9 NC_006883.1 + 21702 0.81 0.379057
Target:  5'- cCUGGUCCUGcagguccuccUGGUCCAAGUggaGGUCCu -3'
miRNA:   3'- cGACCAGGACu---------ACCAGGUUCA---CCAGG- -5'
31679 3' -53.9 NC_006883.1 + 23422 0.81 0.387151
Target:  5'- uGCUGGUCCUccaGGUCCAucUGGUCCa -3'
miRNA:   3'- -CGACCAGGAcuaCCAGGUucACCAGG- -5'
31679 3' -53.9 NC_006883.1 + 21459 0.81 0.387151
Target:  5'- aCUGGUCCUGcUGGUCCuccaGGUCCa -3'
miRNA:   3'- cGACCAGGACuACCAGGuucaCCAGG- -5'
31679 3' -53.9 NC_006883.1 + 21659 0.8 0.42928
Target:  5'- uGCUGGUCCaacaGGUCCAAcUGGUCCu -3'
miRNA:   3'- -CGACCAGGacuaCCAGGUUcACCAGG- -5'
31679 3' -53.9 NC_006883.1 + 26527 0.8 0.42928
Target:  5'- uGCUGGUCCaccaGGUCCAAcUGGUCCu -3'
miRNA:   3'- -CGACCAGGacuaCCAGGUUcACCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.