miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31679 5' -59.8 NC_006883.1 + 21128 0.73 0.446027
Target:  5'- uUGGguUCCUGUUGGUGGUggauuaaUUCCAGGUg -3'
miRNA:   3'- gACC--AGGACGACCACCAg------GAGGUCCA- -5'
31679 5' -59.8 NC_006883.1 + 21459 0.85 0.086402
Target:  5'- aCUGGUCCUGC---UGGUCCUCCAGGUc -3'
miRNA:   3'- -GACCAGGACGaccACCAGGAGGUCCA- -5'
31679 5' -59.8 NC_006883.1 + 21495 0.75 0.36454
Target:  5'- aCUGGUCCUuCUGGUccuccaGGUCCuucuggUCCAGGUg -3'
miRNA:   3'- -GACCAGGAcGACCA------CCAGG------AGGUCCA- -5'
31679 5' -59.8 NC_006883.1 + 21540 0.76 0.330671
Target:  5'- cCUGGUCCUGCUGGcccucaaggugauguUGGUCCgagugguggUCCuGGUc -3'
miRNA:   3'- -GACCAGGACGACC---------------ACCAGG---------AGGuCCA- -5'
31679 5' -59.8 NC_006883.1 + 21612 1.06 0.00314
Target:  5'- cCUGGUCCUGCUGGUGGUCCUCCAGGUc -3'
miRNA:   3'- -GACCAGGACGACCACCAGGAGGUCCA- -5'
31679 5' -59.8 NC_006883.1 + 21678 0.76 0.327838
Target:  5'- aCUGGUCCUcCUGGUacuggaucuccuGGUCCUgCAGGUc -3'
miRNA:   3'- -GACCAGGAcGACCA------------CCAGGAgGUCCA- -5'
31679 5' -59.8 NC_006883.1 + 21747 0.83 0.12084
Target:  5'- aCUGGUCCUGCUGGUccuacggguccagacGGUCCUaCAGGUc -3'
miRNA:   3'- -GACCAGGACGACCA---------------CCAGGAgGUCCA- -5'
31679 5' -59.8 NC_006883.1 + 21792 1.07 0.002978
Target:  5'- aCUGGUCCUGCUGGUGGUCCUCCAGGUc -3'
miRNA:   3'- -GACCAGGACGACCACCAGGAGGUCCA- -5'
31679 5' -59.8 NC_006883.1 + 21822 0.76 0.320834
Target:  5'- cCUGGUCCaa---GUGGUCCUCCAGGUc -3'
miRNA:   3'- -GACCAGGacgacCACCAGGAGGUCCA- -5'
31679 5' -59.8 NC_006883.1 + 21859 0.92 0.031216
Target:  5'- aUGGUCCUGCUGGUccaagugguucaccuGGUCCUCCAGGUc -3'
miRNA:   3'- gACCAGGACGACCA---------------CCAGGAGGUCCA- -5'
31679 5' -59.8 NC_006883.1 + 21898 0.74 0.387887
Target:  5'- ---nUCCUagUGGUGGUCCUCCAGGUc -3'
miRNA:   3'- gaccAGGAcgACCACCAGGAGGUCCA- -5'
31679 5' -59.8 NC_006883.1 + 21933 0.85 0.090874
Target:  5'- cCUGGUCCUGC---UGGUCCUCCAGGUc -3'
miRNA:   3'- -GACCAGGACGaccACCAGGAGGUCCA- -5'
31679 5' -59.8 NC_006883.1 + 21977 0.71 0.594117
Target:  5'- cCUGGUCCUGCUGGaucugcUGGUgcgauaCCUgCuGGUg -3'
miRNA:   3'- -GACCAGGACGACC------ACCA------GGAgGuCCA- -5'
31679 5' -59.8 NC_006883.1 + 22884 0.83 0.125719
Target:  5'- aCUGGUCCUGCUGGUG---CUCCAGGUu -3'
miRNA:   3'- -GACCAGGACGACCACcagGAGGUCCA- -5'
31679 5' -59.8 NC_006883.1 + 22911 0.79 0.201007
Target:  5'- aCUGGaCCUGCUGGUccugaugguccaaguGGUCCUCCuGGUc -3'
miRNA:   3'- -GACCaGGACGACCA---------------CCAGGAGGuCCA- -5'
31679 5' -59.8 NC_006883.1 + 22955 1.06 0.00314
Target:  5'- cCUGGUCCUGCUGGUGGUCCUCCAGGUc -3'
miRNA:   3'- -GACCAGGACGACCACCAGGAGGUCCA- -5'
31679 5' -59.8 NC_006883.1 + 22985 0.84 0.106705
Target:  5'- aCUGGUCCUGCuggugaugaUGGUgcuccugguccucaaGGUCCUCCAGGUa -3'
miRNA:   3'- -GACCAGGACG---------ACCA---------------CCAGGAGGUCCA- -5'
31679 5' -59.8 NC_006883.1 + 23059 0.79 0.215672
Target:  5'- -aGGUCCUGCUGGUucuccagguccaacuGGUCCUgUAGGUc -3'
miRNA:   3'- gaCCAGGACGACCA---------------CCAGGAgGUCCA- -5'
31679 5' -59.8 NC_006883.1 + 23414 0.85 0.090874
Target:  5'- cCUGGUCCUGC---UGGUCCUCCAGGUc -3'
miRNA:   3'- -GACCAGGACGaccACCAGGAGGUCCA- -5'
31679 5' -59.8 NC_006883.1 + 23441 0.74 0.403988
Target:  5'- uCUGGUCCaGCa---GGUCCUCCAGGUc -3'
miRNA:   3'- -GACCAGGaCGaccaCCAGGAGGUCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.