miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31679 5' -59.8 NC_006883.1 + 26519 0.8 0.187216
Target:  5'- aCUGGUCCUGCUGGUccaccagguccaacuGGUCCUgCuGGUc -3'
miRNA:   3'- -GACCAGGACGACCA---------------CCAGGAgGuCCA- -5'
31679 5' -59.8 NC_006883.1 + 222774 0.84 0.100486
Target:  5'- aCUGGUCCUuCUGGUGGUCCuguugguccUCCAGGUc -3'
miRNA:   3'- -GACCAGGAcGACCACCAGG---------AGGUCCA- -5'
31679 5' -59.8 NC_006883.1 + 28082 0.84 0.103035
Target:  5'- aCUGGUCCUGC---UGGUCCUCCAGGa -3'
miRNA:   3'- -GACCAGGACGaccACCAGGAGGUCCa -5'
31679 5' -59.8 NC_006883.1 + 22985 0.84 0.106705
Target:  5'- aCUGGUCCUGCuggugaugaUGGUgcuccugguccucaaGGUCCUCCAGGUa -3'
miRNA:   3'- -GACCAGGACG---------ACCA---------------CCAGGAGGUCCA- -5'
31679 5' -59.8 NC_006883.1 + 21747 0.83 0.12084
Target:  5'- aCUGGUCCUGCUGGUccuacggguccagacGGUCCUaCAGGUc -3'
miRNA:   3'- -GACCAGGACGACCA---------------CCAGGAgGUCCA- -5'
31679 5' -59.8 NC_006883.1 + 22884 0.83 0.125719
Target:  5'- aCUGGUCCUGCUGGUG---CUCCAGGUu -3'
miRNA:   3'- -GACCAGGACGACCACcagGAGGUCCA- -5'
31679 5' -59.8 NC_006883.1 + 26384 0.8 0.1726
Target:  5'- aCUGGUCCaaCUGGUccagacGGUCCUCCAGGUc -3'
miRNA:   3'- -GACCAGGacGACCA------CCAGGAGGUCCA- -5'
31679 5' -59.8 NC_006883.1 + 27821 0.8 0.1726
Target:  5'- -aGGUCCUGC---UGGUCCUCCAGGUc -3'
miRNA:   3'- gaCCAGGACGaccACCAGGAGGUCCA- -5'
31679 5' -59.8 NC_006883.1 + 222813 0.8 0.1726
Target:  5'- cCUGGUCCUGCUGGUGGUggaaCGGGUg -3'
miRNA:   3'- -GACCAGGACGACCACCAggagGUCCA- -5'
31679 5' -59.8 NC_006883.1 + 222648 0.84 0.095566
Target:  5'- aCUGGUCCUGCUGGUccuacuGGUUCUCCuGGUc -3'
miRNA:   3'- -GACCAGGACGACCA------CCAGGAGGuCCA- -5'
31679 5' -59.8 NC_006883.1 + 26707 0.85 0.093192
Target:  5'- -aGGUCCUGCUGGUucuccaGGUCCUCCuGGUu -3'
miRNA:   3'- gaCCAGGACGACCA------CCAGGAGGuCCA- -5'
31679 5' -59.8 NC_006883.1 + 23414 0.85 0.090874
Target:  5'- cCUGGUCCUGC---UGGUCCUCCAGGUc -3'
miRNA:   3'- -GACCAGGACGaccACCAGGAGGUCCA- -5'
31679 5' -59.8 NC_006883.1 + 21612 1.06 0.00314
Target:  5'- cCUGGUCCUGCUGGUGGUCCUCCAGGUc -3'
miRNA:   3'- -GACCAGGACGACCACCAGGAGGUCCA- -5'
31679 5' -59.8 NC_006883.1 + 22955 1.06 0.00314
Target:  5'- cCUGGUCCUGCUGGUGGUCCUCCAGGUc -3'
miRNA:   3'- -GACCAGGACGACCACCAGGAGGUCCA- -5'
31679 5' -59.8 NC_006883.1 + 27962 0.94 0.021105
Target:  5'- aCUGGUCCUGCUGGUccuacugguggagauGGUCCUCCAGGUc -3'
miRNA:   3'- -GACCAGGACGACCA---------------CCAGGAGGUCCA- -5'
31679 5' -59.8 NC_006883.1 + 21859 0.92 0.031216
Target:  5'- aUGGUCCUGCUGGUccaagugguucaccuGGUCCUCCAGGUc -3'
miRNA:   3'- gACCAGGACGACCA---------------CCAGGAGGUCCA- -5'
31679 5' -59.8 NC_006883.1 + 26484 0.85 0.082139
Target:  5'- aUGGUCCUGCUGGUgcaacuGGUCCUgCAGGUc -3'
miRNA:   3'- gACCAGGACGACCA------CCAGGAgGUCCA- -5'
31679 5' -59.8 NC_006883.1 + 21459 0.85 0.086402
Target:  5'- aCUGGUCCUGC---UGGUCCUCCAGGUc -3'
miRNA:   3'- -GACCAGGACGaccACCAGGAGGUCCA- -5'
31679 5' -59.8 NC_006883.1 + 28031 0.85 0.090874
Target:  5'- aCUGGUCCUaCUGGUgaugauGGUCCUCCAGGUc -3'
miRNA:   3'- -GACCAGGAcGACCA------CCAGGAGGUCCA- -5'
31679 5' -59.8 NC_006883.1 + 21933 0.85 0.090874
Target:  5'- cCUGGUCCUGC---UGGUCCUCCAGGUc -3'
miRNA:   3'- -GACCAGGACGaccACCAGGAGGUCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.