miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31680 3' -49.7 NC_006883.1 + 23414 0.85 0.411056
Target:  5'- cCUGGUCCUGcuGGUCCUcCAGGUCCa -3'
miRNA:   3'- uGACCAGGACauCCAGGAaGUUUAGG- -5'
31680 3' -49.7 NC_006883.1 + 23427 0.72 0.962911
Target:  5'- cCUGGUggaCCUGUAGGaCCaUCuGGUCCa -3'
miRNA:   3'- uGACCA---GGACAUCCaGGaAGuUUAGG- -5'
31680 3' -49.7 NC_006883.1 + 23441 0.82 0.584537
Target:  5'- uCUGGUCCaGcAGGUCCUcCAGGUCCa -3'
miRNA:   3'- uGACCAGGaCaUCCAGGAaGUUUAGG- -5'
31680 3' -49.7 NC_006883.1 + 23641 0.76 0.85494
Target:  5'- aACaGGUCCaGcAGGUCCUaCAGGUCCa -3'
miRNA:   3'- -UGaCCAGGaCaUCCAGGAaGUUUAGG- -5'
31680 3' -49.7 NC_006883.1 + 24691 0.72 0.966237
Target:  5'- uACaGGUCCaaguGGUCCaUCAGGUCCa -3'
miRNA:   3'- -UGaCCAGGacauCCAGGaAGUUUAGG- -5'
31680 3' -49.7 NC_006883.1 + 24739 0.79 0.718072
Target:  5'- --cGGUCCUccAGGUCCUcCAGGUCCa -3'
miRNA:   3'- ugaCCAGGAcaUCCAGGAaGUUUAGG- -5'
31680 3' -49.7 NC_006883.1 + 26268 0.78 0.757527
Target:  5'- -aUGGUCCaGcAGGUCCUaCAGGUCCa -3'
miRNA:   3'- ugACCAGGaCaUCCAGGAaGUUUAGG- -5'
31680 3' -49.7 NC_006883.1 + 26356 0.72 0.974946
Target:  5'- aACUGGUCCUGcuGGUCCcaCAGGUg- -3'
miRNA:   3'- -UGACCAGGACauCCAGGaaGUUUAgg -5'
31680 3' -49.7 NC_006883.1 + 26392 0.8 0.697855
Target:  5'- aACUGGUCCagacGGUCCUcCAGGUCCa -3'
miRNA:   3'- -UGACCAGGacauCCAGGAaGUUUAGG- -5'
31680 3' -49.7 NC_006883.1 + 26428 0.71 0.977447
Target:  5'- aACUGGUaCUccAGGUCCagCAGGUCCu -3'
miRNA:   3'- -UGACCAgGAcaUCCAGGaaGUUUAGG- -5'
31680 3' -49.7 NC_006883.1 + 26484 0.73 0.958626
Target:  5'- -aUGGUCCUGcuggugcaacuGGUCCUgCAGGUCCn -3'
miRNA:   3'- ugACCAGGACau---------CCAGGAaGUUUAGG- -5'
31680 3' -49.7 NC_006883.1 + 26518 0.83 0.504099
Target:  5'- aACUGGUCCUGcuGGUCCacCAGGUCCa -3'
miRNA:   3'- -UGACCAGGACauCCAGGaaGUUUAGG- -5'
31680 3' -49.7 NC_006883.1 + 26545 0.67 0.998713
Target:  5'- aACUGGUCCUGcuGGUCCc-CAAGg-- -3'
miRNA:   3'- -UGACCAGGACauCCAGGaaGUUUagg -5'
31680 3' -49.7 NC_006883.1 + 26548 0.68 0.997794
Target:  5'- uGCUGGaCCUGUAGGaCCUgcuGGaCCa -3'
miRNA:   3'- -UGACCaGGACAUCCaGGAaguUUaGG- -5'
31680 3' -49.7 NC_006883.1 + 26707 0.72 0.966237
Target:  5'- --aGGUCCUGcuGGUUCUcCAGGUCCu -3'
miRNA:   3'- ugaCCAGGACauCCAGGAaGUUUAGG- -5'
31680 3' -49.7 NC_006883.1 + 27219 0.8 0.697855
Target:  5'- cCUGGUCCUacAGGUCCagCAGGUCCu -3'
miRNA:   3'- uGACCAGGAcaUCCAGGaaGUUUAGG- -5'
31680 3' -49.7 NC_006883.1 + 27257 0.7 0.990118
Target:  5'- --aGGUCCUacagGUGgagauGGUCCUcCAGGUCCa -3'
miRNA:   3'- ugaCCAGGA----CAU-----CCAGGAaGUUUAGG- -5'
31680 3' -49.7 NC_006883.1 + 27308 0.75 0.891622
Target:  5'- cACaGGUCCaGcAGGUCCUcCAGGUCCu -3'
miRNA:   3'- -UGaCCAGGaCaUCCAGGAaGUUUAGG- -5'
31680 3' -49.7 NC_006883.1 + 27383 0.75 0.904699
Target:  5'- --aGGUCCaGcAGGUCCUcCAGGUCCu -3'
miRNA:   3'- ugaCCAGGaCaUCCAGGAaGUUUAGG- -5'
31680 3' -49.7 NC_006883.1 + 27452 0.71 0.983848
Target:  5'- uACUGGUCCgacAGGUCCcaCAGGaCCa -3'
miRNA:   3'- -UGACCAGGacaUCCAGGaaGUUUaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.