miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31680 3' -49.7 NC_006883.1 + 21458 0.88 0.293335
Target:  5'- uACUGGUCCUGcuGGUCCUcCAGGUCCa -3'
miRNA:   3'- -UGACCAGGACauCCAGGAaGUUUAGG- -5'
31680 3' -49.7 NC_006883.1 + 21504 0.86 0.376925
Target:  5'- uCUGGUCCUccAGGUCCUUCuGGUCCa -3'
miRNA:   3'- uGACCAGGAcaUCCAGGAAGuUUAGG- -5'
31680 3' -49.7 NC_006883.1 + 21567 0.66 0.999621
Target:  5'- gUUGGUCCgagugGU-GGUCCU---GGUCCu -3'
miRNA:   3'- uGACCAGGa----CAuCCAGGAaguUUAGG- -5'
31680 3' -49.7 NC_006883.1 + 21612 0.85 0.447038
Target:  5'- cCUGGUCCUGcugguGGUCCUcCAGGUCCg -3'
miRNA:   3'- uGACCAGGACau---CCAGGAaGUUUAGG- -5'
31680 3' -49.7 NC_006883.1 + 21659 0.7 0.987278
Target:  5'- uGCUGGUCCaacAGGUCCaacuGGUCCu -3'
miRNA:   3'- -UGACCAGGacaUCCAGGaaguUUAGG- -5'
31680 3' -49.7 NC_006883.1 + 21702 0.84 0.484704
Target:  5'- cCUGGUCCUGcAGGUCCUcCuGGUCCa -3'
miRNA:   3'- uGACCAGGACaUCCAGGAaGuUUAGG- -5'
31680 3' -49.7 NC_006883.1 + 21746 0.87 0.344757
Target:  5'- aACUGGUCCUGcuGGUCCUaCGGGUCCa -3'
miRNA:   3'- -UGACCAGGACauCCAGGAaGUUUAGG- -5'
31680 3' -49.7 NC_006883.1 + 21791 0.87 0.352611
Target:  5'- aACUGGUCCUGcugguGGUCCUcCAGGUCCu -3'
miRNA:   3'- -UGACCAGGACau---CCAGGAaGUUUAGG- -5'
31680 3' -49.7 NC_006883.1 + 21822 0.78 0.785963
Target:  5'- cCUGGUCCaaguGGUCCUcCAGGUCCg -3'
miRNA:   3'- uGACCAGGacauCCAGGAaGUUUAGG- -5'
31680 3' -49.7 NC_006883.1 + 21866 0.78 0.785963
Target:  5'- uGCUGGUCCaagugGUucaccuGGUCCUcCAGGUCCu -3'
miRNA:   3'- -UGACCAGGa----CAu-----CCAGGAaGUUUAGG- -5'
31680 3' -49.7 NC_006883.1 + 21933 0.79 0.737988
Target:  5'- cCUGGUCCUGcuGGUCCUcCAGGUCa -3'
miRNA:   3'- uGACCAGGACauCCAGGAaGUUUAGg -5'
31680 3' -49.7 NC_006883.1 + 21969 0.67 0.999283
Target:  5'- -gUGGUCCUccuGGUCCUgcuGGAUCUg -3'
miRNA:   3'- ugACCAGGAcauCCAGGAag-UUUAGG- -5'
31680 3' -49.7 NC_006883.1 + 22883 0.69 0.993419
Target:  5'- aACUGGUCCUGcuGGUgCUcCAGGUUUa -3'
miRNA:   3'- -UGACCAGGACauCCAgGAaGUUUAGG- -5'
31680 3' -49.7 NC_006883.1 + 22919 0.76 0.862713
Target:  5'- uGCUGGUCCUGauGGUCCaaguGGUCCu -3'
miRNA:   3'- -UGACCAGGACauCCAGGaaguUUAGG- -5'
31680 3' -49.7 NC_006883.1 + 22955 0.85 0.447038
Target:  5'- cCUGGUCCUGcugguGGUCCUcCAGGUCCa -3'
miRNA:   3'- uGACCAGGACau---CCAGGAaGUUUAGG- -5'
31680 3' -49.7 NC_006883.1 + 23012 0.73 0.959362
Target:  5'- cCUGGUCCUcaAGGUCCUcCAGGUa- -3'
miRNA:   3'- uGACCAGGAcaUCCAGGAaGUUUAgg -5'
31680 3' -49.7 NC_006883.1 + 23047 0.77 0.80423
Target:  5'- aACUGGUCCUcaAGGUCCUgcugguucucCAGGUCCn -3'
miRNA:   3'- -UGACCAGGAcaUCCAGGAa---------GUUUAGG- -5'
31680 3' -49.7 NC_006883.1 + 23083 1.14 0.010267
Target:  5'- aACUGGUCCUGUAGGUCCUUCAAAUCCa -3'
miRNA:   3'- -UGACCAGGACAUCCAGGAAGUUUAGG- -5'
31680 3' -49.7 NC_006883.1 + 23116 0.79 0.74781
Target:  5'- aACUGGUCCcacAGGUCCcaCAGGUCCa -3'
miRNA:   3'- -UGACCAGGacaUCCAGGaaGUUUAGG- -5'
31680 3' -49.7 NC_006883.1 + 23154 0.74 0.922515
Target:  5'- -aUGGUCCUacAGGUCCacCAGGUCCa -3'
miRNA:   3'- ugACCAGGAcaUCCAGGaaGUUUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.