miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31680 3' -49.7 NC_006883.1 + 23083 1.14 0.010267
Target:  5'- aACUGGUCCUGUAGGUCCUUCAAAUCCa -3'
miRNA:   3'- -UGACCAGGACAUCCAGGAAGUUUAGG- -5'
31680 3' -49.7 NC_006883.1 + 21458 0.88 0.293335
Target:  5'- uACUGGUCCUGcuGGUCCUcCAGGUCCa -3'
miRNA:   3'- -UGACCAGGACauCCAGGAaGUUUAGG- -5'
31680 3' -49.7 NC_006883.1 + 21746 0.87 0.344757
Target:  5'- aACUGGUCCUGcuGGUCCUaCGGGUCCa -3'
miRNA:   3'- -UGACCAGGACauCCAGGAaGUUUAGG- -5'
31680 3' -49.7 NC_006883.1 + 21791 0.87 0.352611
Target:  5'- aACUGGUCCUGcugguGGUCCUcCAGGUCCu -3'
miRNA:   3'- -UGACCAGGACau---CCAGGAaGUUUAGG- -5'
31680 3' -49.7 NC_006883.1 + 222787 0.87 0.360591
Target:  5'- -gUGGUCCUGUuGGUCCUcCAGGUCCu -3'
miRNA:   3'- ugACCAGGACAuCCAGGAaGUUUAGG- -5'
31680 3' -49.7 NC_006883.1 + 21504 0.86 0.376925
Target:  5'- uCUGGUCCUccAGGUCCUUCuGGUCCa -3'
miRNA:   3'- uGACCAGGAcaUCCAGGAAGuUUAGG- -5'
31680 3' -49.7 NC_006883.1 + 23414 0.85 0.411056
Target:  5'- cCUGGUCCUGcuGGUCCUcCAGGUCCa -3'
miRNA:   3'- uGACCAGGACauCCAGGAaGUUUAGG- -5'
31680 3' -49.7 NC_006883.1 + 21612 0.85 0.447038
Target:  5'- cCUGGUCCUGcugguGGUCCUcCAGGUCCg -3'
miRNA:   3'- uGACCAGGACau---CCAGGAaGUUUAGG- -5'
31680 3' -49.7 NC_006883.1 + 22955 0.85 0.447038
Target:  5'- cCUGGUCCUGcugguGGUCCUcCAGGUCCa -3'
miRNA:   3'- uGACCAGGACau---CCAGGAaGUUUAGG- -5'
31680 3' -49.7 NC_006883.1 + 21702 0.84 0.484704
Target:  5'- cCUGGUCCUGcAGGUCCUcCuGGUCCa -3'
miRNA:   3'- uGACCAGGACaUCCAGGAaGuUUAGG- -5'
31680 3' -49.7 NC_006883.1 + 26518 0.83 0.504099
Target:  5'- aACUGGUCCUGcuGGUCCacCAGGUCCa -3'
miRNA:   3'- -UGACCAGGACauCCAGGaaGUUUAGG- -5'
31680 3' -49.7 NC_006883.1 + 23441 0.82 0.584537
Target:  5'- uCUGGUCCaGcAGGUCCUcCAGGUCCa -3'
miRNA:   3'- uGACCAGGaCaUCCAGGAaGUUUAGG- -5'
31680 3' -49.7 NC_006883.1 + 28050 0.82 0.594817
Target:  5'- -aUGGUCCUccAGGUCCUcCAGGUCCa -3'
miRNA:   3'- ugACCAGGAcaUCCAGGAaGUUUAGG- -5'
31680 3' -49.7 NC_006883.1 + 28258 0.8 0.66713
Target:  5'- aACUGGUCCaacAGGUCCUUCAGguggaagugGUCCu -3'
miRNA:   3'- -UGACCAGGacaUCCAGGAAGUU---------UAGG- -5'
31680 3' -49.7 NC_006883.1 + 27970 0.8 0.677413
Target:  5'- uGCUGGUCCUacugGUGgagauGGUCCUcCAGGUCCa -3'
miRNA:   3'- -UGACCAGGA----CAU-----CCAGGAaGUUUAGG- -5'
31680 3' -49.7 NC_006883.1 + 27219 0.8 0.697855
Target:  5'- cCUGGUCCUacAGGUCCagCAGGUCCu -3'
miRNA:   3'- uGACCAGGAcaUCCAGGaaGUUUAGG- -5'
31680 3' -49.7 NC_006883.1 + 26392 0.8 0.697855
Target:  5'- aACUGGUCCagacGGUCCUcCAGGUCCa -3'
miRNA:   3'- -UGACCAGGacauCCAGGAaGUUUAGG- -5'
31680 3' -49.7 NC_006883.1 + 24739 0.79 0.718072
Target:  5'- --cGGUCCUccAGGUCCUcCAGGUCCa -3'
miRNA:   3'- ugaCCAGGAcaUCCAGGAaGUUUAGG- -5'
31680 3' -49.7 NC_006883.1 + 27872 0.79 0.718072
Target:  5'- aACUGGUCCaacuGGUCCUUCAGguggaacugGUCCa -3'
miRNA:   3'- -UGACCAGGacauCCAGGAAGUU---------UAGG- -5'
31680 3' -49.7 NC_006883.1 + 222746 0.79 0.718072
Target:  5'- aACUGGUCCUGUuggaaauccuGGUCCUaCuGGUCCu -3'
miRNA:   3'- -UGACCAGGACAu---------CCAGGAaGuUUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.