miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31681 3' -58.2 NC_006883.1 + 23404 1.13 0.001909
Target:  5'- uGGUGGUGGACCUGGUCCUGCUGGUCCu -3'
miRNA:   3'- -CCACCACCUGGACCAGGACGACCAGG- -5'
31681 3' -58.2 NC_006883.1 + 23426 0.71 0.663576
Target:  5'- -cUGGUGGACCuguaggaccaucUGGUCCaGUUGGaCCu -3'
miRNA:   3'- ccACCACCUGG------------ACCAGGaCGACCaGG- -5'
31681 3' -58.2 NC_006883.1 + 23629 0.7 0.757692
Target:  5'- aGGUGuUGGAUCaacaGGUCCaGCaGGUCCu -3'
miRNA:   3'- -CCACcACCUGGa---CCAGGaCGaCCAGG- -5'
31681 3' -58.2 NC_006883.1 + 23731 0.73 0.586237
Target:  5'- aGGaGGaccugcUGGACCUGGaggaCCUGCUGGaCCa -3'
miRNA:   3'- -CCaCC------ACCUGGACCa---GGACGACCaGG- -5'
31681 3' -58.2 NC_006883.1 + 23929 0.67 0.884706
Target:  5'- -uUGGaccaguUGGACCUguaGGaCCUGCUGGaCCu -3'
miRNA:   3'- ccACC------ACCUGGA---CCaGGACGACCaGG- -5'
31681 3' -58.2 NC_006883.1 + 26341 0.78 0.330029
Target:  5'- uGGUGcaacaGGuccaaCUGGUCCUGCUGGUCCc -3'
miRNA:   3'- -CCACca---CCug---GACCAGGACGACCAGG- -5'
31681 3' -58.2 NC_006883.1 + 26377 0.77 0.382198
Target:  5'- --aGGUGGAaCUGGUCCaaCUGGUCCa -3'
miRNA:   3'- ccaCCACCUgGACCAGGacGACCAGG- -5'
31681 3' -58.2 NC_006883.1 + 26419 0.78 0.351727
Target:  5'- aGGUGGUGGAacugguacuCCaGGUCCaGCaGGUCCu -3'
miRNA:   3'- -CCACCACCU---------GGaCCAGGaCGaCCAGG- -5'
31681 3' -58.2 NC_006883.1 + 26494 0.79 0.302659
Target:  5'- uGGUGcaacUGGuCCugcagguccaacUGGUCCUGCUGGUCCa -3'
miRNA:   3'- -CCACc---ACCuGG------------ACCAGGACGACCAGG- -5'
31681 3' -58.2 NC_006883.1 + 26539 0.76 0.406176
Target:  5'- --aGGUccaaCUGGUCCUGCUGGUCCc -3'
miRNA:   3'- ccaCCAccugGACCAGGACGACCAGG- -5'
31681 3' -58.2 NC_006883.1 + 26557 0.68 0.856914
Target:  5'- aGGaGGaccugcUGGACCUguaGGaCCUGCUGGaCCa -3'
miRNA:   3'- -CCaCC------ACCUGGA---CCaGGACGACCaGG- -5'
31681 3' -58.2 NC_006883.1 + 26681 0.67 0.884706
Target:  5'- aGUGaucaGUGGguaucaguuucACaaGGUCCUGCUGGUUCu -3'
miRNA:   3'- cCAC----CACC-----------UGgaCCAGGACGACCAGG- -5'
31681 3' -58.2 NC_006883.1 + 26792 0.68 0.849498
Target:  5'- -cUGGUGGACCagcaggaccaguUGGaCCUGCaGGaCCa -3'
miRNA:   3'- ccACCACCUGG------------ACCaGGACGaCCaGG- -5'
31681 3' -58.2 NC_006883.1 + 27201 0.69 0.784343
Target:  5'- aGUGGUccgcaaGGugcuCCUGGUCCUaCaGGUCCa -3'
miRNA:   3'- cCACCA------CCu---GGACCAGGAcGaCCAGG- -5'
31681 3' -58.2 NC_006883.1 + 27266 0.7 0.748599
Target:  5'- --aGGUGGAgaUGGUCCUcCaGGUCCa -3'
miRNA:   3'- ccaCCACCUggACCAGGAcGaCCAGG- -5'
31681 3' -58.2 NC_006883.1 + 27299 0.77 0.390085
Target:  5'- aGGUGGUGGcACa-GGUCCaGCaGGUCCu -3'
miRNA:   3'- -CCACCACC-UGgaCCAGGaCGaCCAGG- -5'
31681 3' -58.2 NC_006883.1 + 27365 0.7 0.757692
Target:  5'- uGGUGGaacUGGuacuCCaGGUCCaGCaGGUCCu -3'
miRNA:   3'- -CCACC---ACCu---GGaCCAGGaCGaCCAGG- -5'
31681 3' -58.2 NC_006883.1 + 27436 0.82 0.196339
Target:  5'- -aUGGUGGAUCaGGUCCUaCUGGUCCg -3'
miRNA:   3'- ccACCACCUGGaCCAGGAcGACCAGG- -5'
31681 3' -58.2 NC_006883.1 + 27481 0.66 0.920342
Target:  5'- -cUGGUcccacaGGuccaaCUGGUCCUGCUGGagCa -3'
miRNA:   3'- ccACCA------CCug---GACCAGGACGACCagG- -5'
31681 3' -58.2 NC_006883.1 + 27510 0.67 0.891164
Target:  5'- -cUGaUGGACCUguaGGaCCUGCUGGaCCu -3'
miRNA:   3'- ccACcACCUGGA---CCaGGACGACCaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.