miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31681 3' -58.2 NC_006883.1 + 15535 0.67 0.891164
Target:  5'- aGUGGUGGAUCUGGUUauaaUGCaGcaCCu -3'
miRNA:   3'- cCACCACCUGGACCAGg---ACGaCcaGG- -5'
31681 3' -58.2 NC_006883.1 + 21446 0.98 0.019708
Target:  5'- cGGUGGUGGuccuaCUGGUCCUGCUGGUCCu -3'
miRNA:   3'- -CCACCACCug---GACCAGGACGACCAGG- -5'
31681 3' -58.2 NC_006883.1 + 21479 0.7 0.766686
Target:  5'- aGGUccaacUGGAauaaCUGGUCCUuCUGGUCCu -3'
miRNA:   3'- -CCAcc---ACCUg---GACCAGGAcGACCAGG- -5'
31681 3' -58.2 NC_006883.1 + 21530 0.91 0.056906
Target:  5'- aGGUGGcGGuCCUGGUCCUGCUGGcCCu -3'
miRNA:   3'- -CCACCaCCuGGACCAGGACGACCaGG- -5'
31681 3' -58.2 NC_006883.1 + 21576 0.9 0.06465
Target:  5'- aGUGGUGGuCCUGGUCCuacuggaccUGCUGGUCCu -3'
miRNA:   3'- cCACCACCuGGACCAGG---------ACGACCAGG- -5'
31681 3' -58.2 NC_006883.1 + 21622 0.74 0.538651
Target:  5'- -cUGGUGGuCCUccagguccgcaaGGUCCgcaaggugaUGCUGGUCCa -3'
miRNA:   3'- ccACCACCuGGA------------CCAGG---------ACGACCAGG- -5'
31681 3' -58.2 NC_006883.1 + 21688 0.78 0.323019
Target:  5'- -cUGGUacuGGAucuCCUGGUCCUGCaGGUCCu -3'
miRNA:   3'- ccACCA---CCU---GGACCAGGACGaCCAGG- -5'
31681 3' -58.2 NC_006883.1 + 21729 0.82 0.201012
Target:  5'- aGUGGagguccUGGuccaaCUGGUCCUGCUGGUCCu -3'
miRNA:   3'- cCACC------ACCug---GACCAGGACGACCAGG- -5'
31681 3' -58.2 NC_006883.1 + 21802 0.78 0.351727
Target:  5'- -cUGGUGGuCCUccaGGUCCUcCUGGUCCa -3'
miRNA:   3'- ccACCACCuGGA---CCAGGAcGACCAGG- -5'
31681 3' -58.2 NC_006883.1 + 21849 0.95 0.029113
Target:  5'- aGUGGUGGAgaUGGUCCUGCUGGUCCa -3'
miRNA:   3'- cCACCACCUggACCAGGACGACCAGG- -5'
31681 3' -58.2 NC_006883.1 + 21876 0.72 0.634555
Target:  5'- aGUGGUucACCUGGUCCUcCaGGUCCu -3'
miRNA:   3'- cCACCAccUGGACCAGGAcGaCCAGG- -5'
31681 3' -58.2 NC_006883.1 + 21924 1.02 0.010804
Target:  5'- aGUGGUGGuCCUGGUCCUGCUGGUCCu -3'
miRNA:   3'- cCACCACCuGGACCAGGACGACCAGG- -5'
31681 3' -58.2 NC_006883.1 + 21968 0.79 0.296096
Target:  5'- aGUGGUccuCCUGGUCCUGCUGGaUCUg -3'
miRNA:   3'- cCACCAccuGGACCAGGACGACC-AGG- -5'
31681 3' -58.2 NC_006883.1 + 22868 0.71 0.692392
Target:  5'- aGGUGcuccaGGuccaaCUGGUCCUGCUGGUgCu -3'
miRNA:   3'- -CCACca---CCug---GACCAGGACGACCAgG- -5'
31681 3' -58.2 NC_006883.1 + 22904 0.73 0.586237
Target:  5'- aGGUuuaacUGGACCugcUGGUCCUGaUGGUCCa -3'
miRNA:   3'- -CCAcc---ACCUGG---ACCAGGACgACCAGG- -5'
31681 3' -58.2 NC_006883.1 + 22938 0.78 0.330029
Target:  5'- aGUGGUccuccuGGuccCCUGGUCCUGCUgguGGUCCu -3'
miRNA:   3'- cCACCA------CCu--GGACCAGGACGA---CCAGG- -5'
31681 3' -58.2 NC_006883.1 + 22978 0.67 0.884706
Target:  5'- --aGGUccaaCUGGUCCUGCUGGUg- -3'
miRNA:   3'- ccaCCAccugGACCAGGACGACCAgg -5'
31681 3' -58.2 NC_006883.1 + 23004 0.68 0.849498
Target:  5'- -aUGGUGcuCCUGGUCCUcaaGGUCCu -3'
miRNA:   3'- ccACCACcuGGACCAGGAcgaCCAGG- -5'
31681 3' -58.2 NC_006883.1 + 23038 0.81 0.231118
Target:  5'- cGGUGGUccaacuGGuCCUcaaGGUCCUGCUGGUUCu -3'
miRNA:   3'- -CCACCA------CCuGGA---CCAGGACGACCAGG- -5'
31681 3' -58.2 NC_006883.1 + 23077 0.66 0.909302
Target:  5'- --aGGUccaaCUGGUCCUGUaGGUCCu -3'
miRNA:   3'- ccaCCAccugGACCAGGACGaCCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.