miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31681 3' -58.2 NC_006883.1 + 21688 0.78 0.323019
Target:  5'- -cUGGUacuGGAucuCCUGGUCCUGCaGGUCCu -3'
miRNA:   3'- ccACCA---CCU---GGACCAGGACGaCCAGG- -5'
31681 3' -58.2 NC_006883.1 + 21729 0.82 0.201012
Target:  5'- aGUGGagguccUGGuccaaCUGGUCCUGCUGGUCCu -3'
miRNA:   3'- cCACC------ACCug---GACCAGGACGACCAGG- -5'
31681 3' -58.2 NC_006883.1 + 23038 0.81 0.231118
Target:  5'- cGGUGGUccaacuGGuCCUcaaGGUCCUGCUGGUUCu -3'
miRNA:   3'- -CCACCA------CCuGGA---CCAGGACGACCAGG- -5'
31681 3' -58.2 NC_006883.1 + 27893 0.8 0.253239
Target:  5'- aGGUGGaacUGGuccaaCUGGUCCUGCUGGUgCu -3'
miRNA:   3'- -CCACC---ACCug---GACCAGGACGACCAgG- -5'
31681 3' -58.2 NC_006883.1 + 222785 0.8 0.255544
Target:  5'- uGGUGGUccuguugguccuccaGGuccuCCUGGUCCUGCUGGUg- -3'
miRNA:   3'- -CCACCA---------------CCu---GGACCAGGACGACCAgg -5'
31681 3' -58.2 NC_006883.1 + 28209 0.79 0.283302
Target:  5'- -cUGGUGGAgaUGGUCCUcCUGGUCCa -3'
miRNA:   3'- ccACCACCUggACCAGGAcGACCAGG- -5'
31681 3' -58.2 NC_006883.1 + 21968 0.79 0.296096
Target:  5'- aGUGGUccuCCUGGUCCUGCUGGaUCUg -3'
miRNA:   3'- cCACCAccuGGACCAGGACGACC-AGG- -5'
31681 3' -58.2 NC_006883.1 + 26494 0.79 0.302659
Target:  5'- uGGUGcaacUGGuCCugcagguccaacUGGUCCUGCUGGUCCa -3'
miRNA:   3'- -CCACc---ACCuGG------------ACCAGGACGACCAGG- -5'
31681 3' -58.2 NC_006883.1 + 222640 0.78 0.316121
Target:  5'- -cUGGUacuaCUGGUCCUGCUGGUCCu -3'
miRNA:   3'- ccACCAccugGACCAGGACGACCAGG- -5'
31681 3' -58.2 NC_006883.1 + 27436 0.82 0.196339
Target:  5'- -aUGGUGGAUCaGGUCCUaCUGGUCCg -3'
miRNA:   3'- ccACCACCUGGaCCAGGAcGACCAGG- -5'
31681 3' -58.2 NC_006883.1 + 35564 0.83 0.16227
Target:  5'- uGGUGGUGGugUUGGUaUUGCUGGUCa -3'
miRNA:   3'- -CCACCACCugGACCAgGACGACCAGg -5'
31681 3' -58.2 NC_006883.1 + 222667 0.84 0.150928
Target:  5'- -cUGGUucuCCUGGUCCUGCUGGUCCu -3'
miRNA:   3'- ccACCAccuGGACCAGGACGACCAGG- -5'
31681 3' -58.2 NC_006883.1 + 21924 1.02 0.010804
Target:  5'- aGUGGUGGuCCUGGUCCUGCUGGUCCu -3'
miRNA:   3'- cCACCACCuGGACCAGGACGACCAGG- -5'
31681 3' -58.2 NC_006883.1 + 21446 0.98 0.019708
Target:  5'- cGGUGGUGGuccuaCUGGUCCUGCUGGUCCu -3'
miRNA:   3'- -CCACCACCug---GACCAGGACGACCAGG- -5'
31681 3' -58.2 NC_006883.1 + 21849 0.95 0.029113
Target:  5'- aGUGGUGGAgaUGGUCCUGCUGGUCCa -3'
miRNA:   3'- cCACCACCUggACCAGGACGACCAGG- -5'
31681 3' -58.2 NC_006883.1 + 21530 0.91 0.056906
Target:  5'- aGGUGGcGGuCCUGGUCCUGCUGGcCCu -3'
miRNA:   3'- -CCACCaCCuGGACCAGGACGACCaGG- -5'
31681 3' -58.2 NC_006883.1 + 21576 0.9 0.06465
Target:  5'- aGUGGUGGuCCUGGUCCuacuggaccUGCUGGUCCu -3'
miRNA:   3'- cCACCACCuGGACCAGG---------ACGACCAGG- -5'
31681 3' -58.2 NC_006883.1 + 27945 0.89 0.073405
Target:  5'- -aUGGUGGAacugguccgaCUGGUCCUGCUGGUCCu -3'
miRNA:   3'- ccACCACCUg---------GACCAGGACGACCAGG- -5'
31681 3' -58.2 NC_006883.1 + 222695 0.87 0.101798
Target:  5'- uGGUGGaacUGGuccacaagguucACCUGGUCCUGCUGGUUCg -3'
miRNA:   3'- -CCACC---ACC------------UGGACCAGGACGACCAGG- -5'
31681 3' -58.2 NC_006883.1 + 28069 0.85 0.133617
Target:  5'- aGGUccaGGcGGAaCUGGUCCUGCUGGUCCu -3'
miRNA:   3'- -CCA---CCaCCUgGACCAGGACGACCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.