Results 1 - 20 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31682 | 3' | -51.5 | NC_006883.1 | + | 16176 | 0.68 | 0.984601 |
Target: 5'- cGGcAAUGGU---GCUGGUGgGACUGGu -3' miRNA: 3'- -UCaUUACCAggaCGACCACgUUGACC- -5' |
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31682 | 3' | -51.5 | NC_006883.1 | + | 21449 | 0.77 | 0.69487 |
Target: 5'- uGGUGGuccuacUGGUCCUGCUGGUccuccaggucCAACUGGa -3' miRNA: 3'- -UCAUU------ACCAGGACGACCAc---------GUUGACC- -5' |
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31682 | 3' | -51.5 | NC_006883.1 | + | 21536 | 0.68 | 0.989309 |
Target: 5'- cGGUccUGGUCCUGCUGGcccucaagGUGAUguUGGu -3' miRNA: 3'- -UCAuuACCAGGACGACCa-------CGUUG--ACC- -5' |
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31682 | 3' | -51.5 | NC_006883.1 | + | 21575 | 0.72 | 0.922098 |
Target: 5'- gAGUGGUGGUCCugguccuacuggaccUGCUGGUcCucCUGGu -3' miRNA: 3'- -UCAUUACCAGG---------------ACGACCAcGuuGACC- -5' |
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31682 | 3' | -51.5 | NC_006883.1 | + | 21728 | 0.68 | 0.986962 |
Target: 5'- aAGUGGagguccugguccaacUGGUCCUGCUGGUcCuACgGGu -3' miRNA: 3'- -UCAUU---------------ACCAGGACGACCAcGuUGaCC- -5' |
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31682 | 3' | -51.5 | NC_006883.1 | + | 21793 | 0.69 | 0.976058 |
Target: 5'- ----cUGGUCCUGCUGGUGguccuccaggucCucCUGGu -3' miRNA: 3'- ucauuACCAGGACGACCAC------------GuuGACC- -5' |
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31682 | 3' | -51.5 | NC_006883.1 | + | 21851 | 0.82 | 0.436775 |
Target: 5'- uGGUggaGAUGGUCCUGCUGGUcCAAgUGGu -3' miRNA: 3'- -UCA---UUACCAGGACGACCAcGUUgACC- -5' |
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31682 | 3' | -51.5 | NC_006883.1 | + | 21926 | 0.68 | 0.986153 |
Target: 5'- uGGUGGuccUGGUCCUGCUGGUccuccagGuCAGaUGGu -3' miRNA: 3'- -UCAUU---ACCAGGACGACCA-------C-GUUgACC- -5' |
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31682 | 3' | -51.5 | NC_006883.1 | + | 21967 | 0.74 | 0.83552 |
Target: 5'- aAGUGGuccuccUGGUCCugcuggaucUGCUGGUGCGauaccuGCUGGu -3' miRNA: 3'- -UCAUU------ACCAGG---------ACGACCACGU------UGACC- -5' |
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31682 | 3' | -51.5 | NC_006883.1 | + | 22482 | 0.72 | 0.930678 |
Target: 5'- -uUAGUGGUUCUGCUGauaGUGCAAgUGu -3' miRNA: 3'- ucAUUACCAGGACGAC---CACGUUgACc -5' |
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31682 | 3' | -51.5 | NC_006883.1 | + | 22585 | 0.69 | 0.976058 |
Target: 5'- uGGUAGUGGaaCUGCaaguauaucUGGUaCAACUGGa -3' miRNA: 3'- -UCAUUACCagGACG---------ACCAcGUUGACC- -5' |
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31682 | 3' | -51.5 | NC_006883.1 | + | 22885 | 0.84 | 0.344382 |
Target: 5'- ----cUGGUCCUGCUGGUGCuccagguuuAACUGGa -3' miRNA: 3'- ucauuACCAGGACGACCACG---------UUGACC- -5' |
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31682 | 3' | -51.5 | NC_006883.1 | + | 22937 | 0.8 | 0.519074 |
Target: 5'- aAGUGGuccuccugguccccUGGUCCUGCUGGUGguccuccaggucCAACUGGu -3' miRNA: 3'- -UCAUU--------------ACCAGGACGACCAC------------GUUGACC- -5' |
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31682 | 3' | -51.5 | NC_006883.1 | + | 23038 | 0.73 | 0.87741 |
Target: 5'- cGGUGGUccaacugguccucaaGGUCCUGCUGGUucuccaggucCAACUGGu -3' miRNA: 3'- -UCAUUA---------------CCAGGACGACCAc---------GUUGACC- -5' |
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31682 | 3' | -51.5 | NC_006883.1 | + | 23407 | 0.71 | 0.944659 |
Target: 5'- uGGUGGaccUGGUCCUGCUGGUccuccagGUccauCUGGu -3' miRNA: 3'- -UCAUU---ACCAGGACGACCA-------CGuu--GACC- -5' |
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31682 | 3' | -51.5 | NC_006883.1 | + | 23670 | 0.66 | 0.998246 |
Target: 5'- ----cUGGUCCaaCUGGUcCGACUGGu -3' miRNA: 3'- ucauuACCAGGacGACCAcGUUGACC- -5' |
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31682 | 3' | -51.5 | NC_006883.1 | + | 26263 | 0.66 | 0.995989 |
Target: 5'- aGGUAAUGGUCCaGCaGGUccuacagguccaGCAGguccucCUGGa -3' miRNA: 3'- -UCAUUACCAGGaCGaCCA------------CGUU------GACC- -5' |
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31682 | 3' | -51.5 | NC_006883.1 | + | 26358 | 0.75 | 0.818567 |
Target: 5'- ----cUGGUCCUGCUGGUcccacagguGgAACUGGu -3' miRNA: 3'- ucauuACCAGGACGACCA---------CgUUGACC- -5' |
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31682 | 3' | -51.5 | NC_006883.1 | + | 26413 | 0.69 | 0.982724 |
Target: 5'- -----aGGUCCaGgUGGUGgAACUGGu -3' miRNA: 3'- ucauuaCCAGGaCgACCACgUUGACC- -5' |
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31682 | 3' | -51.5 | NC_006883.1 | + | 26479 | 1.11 | 0.009402 |
Target: 5'- aAGUAAUGGUCCUGCUGGUGCAACUGGu -3' miRNA: 3'- -UCAUUACCAGGACGACCACGUUGACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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