miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31682 3' -51.5 NC_006883.1 + 26479 1.11 0.009402
Target:  5'- aAGUAAUGGUCCUGCUGGUGCAACUGGu -3'
miRNA:   3'- -UCAUUACCAGGACGACCACGUUGACC- -5'
31682 3' -51.5 NC_006883.1 + 39888 0.88 0.214505
Target:  5'- uGGUAAUGGUgCUGCUGGUGUucCUGGa -3'
miRNA:   3'- -UCAUUACCAgGACGACCACGuuGACC- -5'
31682 3' -51.5 NC_006883.1 + 222685 0.88 0.21986
Target:  5'- ----cUGGUCCUGCUGGUGgAACUGGu -3'
miRNA:   3'- ucauuACCAGGACGACCACgUUGACC- -5'
31682 3' -51.5 NC_006883.1 + 22885 0.84 0.344382
Target:  5'- ----cUGGUCCUGCUGGUGCuccagguuuAACUGGa -3'
miRNA:   3'- ucauuACCAGGACGACCACG---------UUGACC- -5'
31682 3' -51.5 NC_006883.1 + 222713 0.84 0.376307
Target:  5'- aGGUucaccUGGUCCUGCugguucgccUGGUGCAACUGGu -3'
miRNA:   3'- -UCAuu---ACCAGGACG---------ACCACGUUGACC- -5'
31682 3' -51.5 NC_006883.1 + 21851 0.82 0.436775
Target:  5'- uGGUggaGAUGGUCCUGCUGGUcCAAgUGGu -3'
miRNA:   3'- -UCA---UUACCAGGACGACCAcGUUgACC- -5'
31682 3' -51.5 NC_006883.1 + 22937 0.8 0.519074
Target:  5'- aAGUGGuccuccugguccccUGGUCCUGCUGGUGguccuccaggucCAACUGGu -3'
miRNA:   3'- -UCAUU--------------ACCAGGACGACCAC------------GUUGACC- -5'
31682 3' -51.5 NC_006883.1 + 27893 0.8 0.572107
Target:  5'- aGGUGGaacugguccaacUGGUCCUGCUGGUGCuGAC-GGa -3'
miRNA:   3'- -UCAUU------------ACCAGGACGACCACG-UUGaCC- -5'
31682 3' -51.5 NC_006883.1 + 193992 0.8 0.572107
Target:  5'- -uUGGUGGUgCUGCUGGUGCuACUGu -3'
miRNA:   3'- ucAUUACCAgGACGACCACGuUGACc -5'
31682 3' -51.5 NC_006883.1 + 31589 0.78 0.63352
Target:  5'- ----cUGGUCCUGCUGGUGgAuuaaguGCUGGu -3'
miRNA:   3'- ucauuACCAGGACGACCACgU------UGACC- -5'
31682 3' -51.5 NC_006883.1 + 222641 0.78 0.654064
Target:  5'- uGGUAcuacUGGUCCUGCUGGUcCuACUGGu -3'
miRNA:   3'- -UCAUu---ACCAGGACGACCAcGuUGACC- -5'
31682 3' -51.5 NC_006883.1 + 192084 0.78 0.674537
Target:  5'- cAGUugcuUGG-CCUGCUGGUGUAGgUGGu -3'
miRNA:   3'- -UCAuu--ACCaGGACGACCACGUUgACC- -5'
31682 3' -51.5 NC_006883.1 + 21449 0.77 0.69487
Target:  5'- uGGUGGuccuacUGGUCCUGCUGGUccuccaggucCAACUGGa -3'
miRNA:   3'- -UCAUU------ACCAGGACGACCAc---------GUUGACC- -5'
31682 3' -51.5 NC_006883.1 + 27946 0.76 0.734828
Target:  5'- uGGUGGaacugguccgacUGGUCCUGCUGGUcCuACUGGu -3'
miRNA:   3'- -UCAUU------------ACCAGGACGACCAcGuUGACC- -5'
31682 3' -51.5 NC_006883.1 + 27197 0.76 0.744615
Target:  5'- aAGUAGUGGUCC-GCaaGGUGCucCUGGu -3'
miRNA:   3'- -UCAUUACCAGGaCGa-CCACGuuGACC- -5'
31682 3' -51.5 NC_006883.1 + 27352 0.76 0.754304
Target:  5'- -cUGAUGGUUCUGaUGGUGgAACUGGu -3'
miRNA:   3'- ucAUUACCAGGACgACCACgUUGACC- -5'
31682 3' -51.5 NC_006883.1 + 112172 0.75 0.791879
Target:  5'- -aUGGUGGUUCUGCuaauggUGGUGgAGCUGGc -3'
miRNA:   3'- ucAUUACCAGGACG------ACCACgUUGACC- -5'
31682 3' -51.5 NC_006883.1 + 220479 0.75 0.809831
Target:  5'- uAGuUGGUGGUgUUGCUGGUGgUAAUUGGg -3'
miRNA:   3'- -UC-AUUACCAgGACGACCAC-GUUGACC- -5'
31682 3' -51.5 NC_006883.1 + 26358 0.75 0.818567
Target:  5'- ----cUGGUCCUGCUGGUcccacagguGgAACUGGu -3'
miRNA:   3'- ucauuACCAGGACGACCA---------CgUUGACC- -5'
31682 3' -51.5 NC_006883.1 + 173023 0.75 0.818567
Target:  5'- --gGGUGGUaCUGCUGGUGCuucuuuaggAACUGGu -3'
miRNA:   3'- ucaUUACCAgGACGACCACG---------UUGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.