miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31682 3' -51.5 NC_006883.1 + 16176 0.68 0.984601
Target:  5'- cGGcAAUGGU---GCUGGUGgGACUGGu -3'
miRNA:   3'- -UCaUUACCAggaCGACCACgUUGACC- -5'
31682 3' -51.5 NC_006883.1 + 21449 0.77 0.69487
Target:  5'- uGGUGGuccuacUGGUCCUGCUGGUccuccaggucCAACUGGa -3'
miRNA:   3'- -UCAUU------ACCAGGACGACCAc---------GUUGACC- -5'
31682 3' -51.5 NC_006883.1 + 21536 0.68 0.989309
Target:  5'- cGGUccUGGUCCUGCUGGcccucaagGUGAUguUGGu -3'
miRNA:   3'- -UCAuuACCAGGACGACCa-------CGUUG--ACC- -5'
31682 3' -51.5 NC_006883.1 + 21575 0.72 0.922098
Target:  5'- gAGUGGUGGUCCugguccuacuggaccUGCUGGUcCucCUGGu -3'
miRNA:   3'- -UCAUUACCAGG---------------ACGACCAcGuuGACC- -5'
31682 3' -51.5 NC_006883.1 + 21728 0.68 0.986962
Target:  5'- aAGUGGagguccugguccaacUGGUCCUGCUGGUcCuACgGGu -3'
miRNA:   3'- -UCAUU---------------ACCAGGACGACCAcGuUGaCC- -5'
31682 3' -51.5 NC_006883.1 + 21793 0.69 0.976058
Target:  5'- ----cUGGUCCUGCUGGUGguccuccaggucCucCUGGu -3'
miRNA:   3'- ucauuACCAGGACGACCAC------------GuuGACC- -5'
31682 3' -51.5 NC_006883.1 + 21851 0.82 0.436775
Target:  5'- uGGUggaGAUGGUCCUGCUGGUcCAAgUGGu -3'
miRNA:   3'- -UCA---UUACCAGGACGACCAcGUUgACC- -5'
31682 3' -51.5 NC_006883.1 + 21926 0.68 0.986153
Target:  5'- uGGUGGuccUGGUCCUGCUGGUccuccagGuCAGaUGGu -3'
miRNA:   3'- -UCAUU---ACCAGGACGACCA-------C-GUUgACC- -5'
31682 3' -51.5 NC_006883.1 + 21967 0.74 0.83552
Target:  5'- aAGUGGuccuccUGGUCCugcuggaucUGCUGGUGCGauaccuGCUGGu -3'
miRNA:   3'- -UCAUU------ACCAGG---------ACGACCACGU------UGACC- -5'
31682 3' -51.5 NC_006883.1 + 22482 0.72 0.930678
Target:  5'- -uUAGUGGUUCUGCUGauaGUGCAAgUGu -3'
miRNA:   3'- ucAUUACCAGGACGAC---CACGUUgACc -5'
31682 3' -51.5 NC_006883.1 + 22585 0.69 0.976058
Target:  5'- uGGUAGUGGaaCUGCaaguauaucUGGUaCAACUGGa -3'
miRNA:   3'- -UCAUUACCagGACG---------ACCAcGUUGACC- -5'
31682 3' -51.5 NC_006883.1 + 22885 0.84 0.344382
Target:  5'- ----cUGGUCCUGCUGGUGCuccagguuuAACUGGa -3'
miRNA:   3'- ucauuACCAGGACGACCACG---------UUGACC- -5'
31682 3' -51.5 NC_006883.1 + 22937 0.8 0.519074
Target:  5'- aAGUGGuccuccugguccccUGGUCCUGCUGGUGguccuccaggucCAACUGGu -3'
miRNA:   3'- -UCAUU--------------ACCAGGACGACCAC------------GUUGACC- -5'
31682 3' -51.5 NC_006883.1 + 23038 0.73 0.87741
Target:  5'- cGGUGGUccaacugguccucaaGGUCCUGCUGGUucuccaggucCAACUGGu -3'
miRNA:   3'- -UCAUUA---------------CCAGGACGACCAc---------GUUGACC- -5'
31682 3' -51.5 NC_006883.1 + 23407 0.71 0.944659
Target:  5'- uGGUGGaccUGGUCCUGCUGGUccuccagGUccauCUGGu -3'
miRNA:   3'- -UCAUU---ACCAGGACGACCA-------CGuu--GACC- -5'
31682 3' -51.5 NC_006883.1 + 23670 0.66 0.998246
Target:  5'- ----cUGGUCCaaCUGGUcCGACUGGu -3'
miRNA:   3'- ucauuACCAGGacGACCAcGUUGACC- -5'
31682 3' -51.5 NC_006883.1 + 26263 0.66 0.995989
Target:  5'- aGGUAAUGGUCCaGCaGGUccuacagguccaGCAGguccucCUGGa -3'
miRNA:   3'- -UCAUUACCAGGaCGaCCA------------CGUU------GACC- -5'
31682 3' -51.5 NC_006883.1 + 26358 0.75 0.818567
Target:  5'- ----cUGGUCCUGCUGGUcccacagguGgAACUGGu -3'
miRNA:   3'- ucauuACCAGGACGACCA---------CgUUGACC- -5'
31682 3' -51.5 NC_006883.1 + 26413 0.69 0.982724
Target:  5'- -----aGGUCCaGgUGGUGgAACUGGu -3'
miRNA:   3'- ucauuaCCAGGaCgACCACgUUGACC- -5'
31682 3' -51.5 NC_006883.1 + 26479 1.11 0.009402
Target:  5'- aAGUAAUGGUCCUGCUGGUGCAACUGGu -3'
miRNA:   3'- -UCAUUACCAGGACGACCACGUUGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.