miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31682 3' -51.5 NC_006883.1 + 26520 0.74 0.827133
Target:  5'- ----cUGGUCCUGCUGGUccaccaggucCAACUGGu -3'
miRNA:   3'- ucauuACCAGGACGACCAc---------GUUGACC- -5'
31682 3' -51.5 NC_006883.1 + 27197 0.76 0.744615
Target:  5'- aAGUAGUGGUCC-GCaaGGUGCucCUGGu -3'
miRNA:   3'- -UCAUUACCAGGaCGa-CCACGuuGACC- -5'
31682 3' -51.5 NC_006883.1 + 27352 0.76 0.754304
Target:  5'- -cUGAUGGUUCUGaUGGUGgAACUGGu -3'
miRNA:   3'- ucAUUACCAGGACgACCACgUUGACC- -5'
31682 3' -51.5 NC_006883.1 + 27499 0.69 0.98068
Target:  5'- ----cUGGUCCUGCUGGaGCAAg--- -3'
miRNA:   3'- ucauuACCAGGACGACCaCGUUgacc -5'
31682 3' -51.5 NC_006883.1 + 27821 0.73 0.895342
Target:  5'- -----aGGUCCUGCUGGUccuccaggucCAACUGGu -3'
miRNA:   3'- ucauuaCCAGGACGACCAc---------GUUGACC- -5'
31682 3' -51.5 NC_006883.1 + 27893 0.8 0.572107
Target:  5'- aGGUGGaacugguccaacUGGUCCUGCUGGUGCuGAC-GGa -3'
miRNA:   3'- -UCAUU------------ACCAGGACGACCACG-UUGaCC- -5'
31682 3' -51.5 NC_006883.1 + 27946 0.76 0.734828
Target:  5'- uGGUGGaacugguccgacUGGUCCUGCUGGUcCuACUGGu -3'
miRNA:   3'- -UCAUU------------ACCAGGACGACCAcGuUGACC- -5'
31682 3' -51.5 NC_006883.1 + 27985 0.68 0.989309
Target:  5'- uGGaGAUGGUCCUcCaGGUcCAACUGGu -3'
miRNA:   3'- -UCaUUACCAGGAcGaCCAcGUUGACC- -5'
31682 3' -51.5 NC_006883.1 + 28083 0.7 0.968903
Target:  5'- ----cUGGUCCUGCUGGUccuccaggaccuccuGguGCUGa -3'
miRNA:   3'- ucauuACCAGGACGACCA---------------CguUGACc -5'
31682 3' -51.5 NC_006883.1 + 28234 0.7 0.964474
Target:  5'- aGGUGGaacUGGUCC-GaCUGGUcCAACUGGu -3'
miRNA:   3'- -UCAUU---ACCAGGaC-GACCAcGUUGACC- -5'
31682 3' -51.5 NC_006883.1 + 31589 0.78 0.63352
Target:  5'- ----cUGGUCCUGCUGGUGgAuuaaguGCUGGu -3'
miRNA:   3'- ucauuACCAGGACGACCACgU------UGACC- -5'
31682 3' -51.5 NC_006883.1 + 36487 0.67 0.994586
Target:  5'- -uUAGUGGaaauaauuaUUCUGgUGGUGUAAUUGGu -3'
miRNA:   3'- ucAUUACC---------AGGACgACCACGUUGACC- -5'
31682 3' -51.5 NC_006883.1 + 37462 0.72 0.919857
Target:  5'- uGGUGGUGGaUCUGCUGGUauuaauACUGGa -3'
miRNA:   3'- -UCAUUACCaGGACGACCAcgu---UGACC- -5'
31682 3' -51.5 NC_006883.1 + 38997 0.66 0.995989
Target:  5'- uGGUAGUGGUCCUuucagauauuCUGGUGUAGgUa- -3'
miRNA:   3'- -UCAUUACCAGGAc---------GACCACGUUgAcc -5'
31682 3' -51.5 NC_006883.1 + 39254 0.7 0.957409
Target:  5'- -cUAAUGGUUCUGUaGGUGguGgUGGa -3'
miRNA:   3'- ucAUUACCAGGACGaCCACguUgACC- -5'
31682 3' -51.5 NC_006883.1 + 39554 0.67 0.99281
Target:  5'- aAGgagAGUGGccuguUgCUGCUGGUGUAugUGa -3'
miRNA:   3'- -UCa--UUACC-----AgGACGACCACGUugACc -5'
31682 3' -51.5 NC_006883.1 + 39888 0.88 0.214505
Target:  5'- uGGUAAUGGUgCUGCUGGUGUucCUGGa -3'
miRNA:   3'- -UCAUUACCAgGACGACCACGuuGACC- -5'
31682 3' -51.5 NC_006883.1 + 79525 0.66 0.995989
Target:  5'- uAGUAAUGGuaaUCCUGCUauuGGUaUAGgUGGa -3'
miRNA:   3'- -UCAUUACC---AGGACGA---CCAcGUUgACC- -5'
31682 3' -51.5 NC_006883.1 + 112088 0.71 0.953539
Target:  5'- -cUGGUGGUagccuuUCUGCUGGUGguGgUGGa -3'
miRNA:   3'- ucAUUACCA------GGACGACCACguUgACC- -5'
31682 3' -51.5 NC_006883.1 + 112172 0.75 0.791879
Target:  5'- -aUGGUGGUUCUGCuaauggUGGUGgAGCUGGc -3'
miRNA:   3'- ucAUUACCAGGACG------ACCACgUUGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.