miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31682 5' -57.1 NC_006883.1 + 23138 0.76 0.411238
Target:  5'- gGUCCAACuggaccagaUGGUCCUaCaGGUCCACCAg -3'
miRNA:   3'- -CAGGUUG---------ACCAGGAcGaCCAGGUGGU- -5'
31682 5' -57.1 NC_006883.1 + 23242 0.67 0.88413
Target:  5'- -aCCAGUUGGaCCUGgaGGaCCACCAg -3'
miRNA:   3'- caGGUUGACCaGGACgaCCaGGUGGU- -5'
31682 5' -57.1 NC_006883.1 + 23409 0.79 0.304454
Target:  5'- -gUgGAcCUGGUCCUGCUGGUCCuCCAg -3'
miRNA:   3'- caGgUU-GACCAGGACGACCAGGuGGU- -5'
31682 5' -57.1 NC_006883.1 + 23435 0.76 0.411238
Target:  5'- gGUCCAuCUGGUCCaGCaGGUCCuCCAg -3'
miRNA:   3'- -CAGGUuGACCAGGaCGaCCAGGuGGU- -5'
31682 5' -57.1 NC_006883.1 + 23663 0.8 0.271837
Target:  5'- gGUCCAACUGGUCCaaCUGGUCCgACUg -3'
miRNA:   3'- -CAGGUUGACCAGGacGACCAGG-UGGu -5'
31682 5' -57.1 NC_006883.1 + 24686 0.67 0.90937
Target:  5'- gGUCCuACaGGUCCaagUGGUCCAUCAg -3'
miRNA:   3'- -CAGGuUGaCCAGGacgACCAGGUGGU- -5'
31682 5' -57.1 NC_006883.1 + 24722 0.77 0.402875
Target:  5'- gGUCCAAgUGGUCCUaGC-GGUCCuCCAg -3'
miRNA:   3'- -CAGGUUgACCAGGA-CGaCCAGGuGGU- -5'
31682 5' -57.1 NC_006883.1 + 26270 0.73 0.616794
Target:  5'- gGUCCAGCaGGUCCUaCaGGUCCAgCAg -3'
miRNA:   3'- -CAGGUUGaCCAGGAcGaCCAGGUgGU- -5'
31682 5' -57.1 NC_006883.1 + 26351 0.94 0.036926
Target:  5'- gGUCCAACUGGUCCUGCUGGUcCCACa- -3'
miRNA:   3'- -CAGGUUGACCAGGACGACCA-GGUGgu -5'
31682 5' -57.1 NC_006883.1 + 26387 0.75 0.463583
Target:  5'- gGUCCAACUGGUCCaGaC-GGUCCuCCAg -3'
miRNA:   3'- -CAGGUUGACCAGGaC-GaCCAGGuGGU- -5'
31682 5' -57.1 NC_006883.1 + 26486 0.7 0.771712
Target:  5'- gGUCCuGCUGGUgCaaCUGGUCCugCAn -3'
miRNA:   3'- -CAGGuUGACCAgGacGACCAGGugGU- -5'
31682 5' -57.1 NC_006883.1 + 26513 1.08 0.003998
Target:  5'- gGUCCAACUGGUCCUGCUGGUCCACCAg -3'
miRNA:   3'- -CAGGUUGACCAGGACGACCAGGUGGU- -5'
31682 5' -57.1 NC_006883.1 + 26540 1 0.014525
Target:  5'- gGUCCAACUGGUCCUGCUGGUCC-CCAa -3'
miRNA:   3'- -CAGGUUGACCAGGACGACCAGGuGGU- -5'
31682 5' -57.1 NC_006883.1 + 26561 0.69 0.807089
Target:  5'- uUCCAGgaGGaCCUGCUGGaCCugUAg -3'
miRNA:   3'- cAGGUUgaCCaGGACGACCaGGugGU- -5'
31682 5' -57.1 NC_006883.1 + 26700 0.7 0.780752
Target:  5'- uUUCAcaaGGUCCUGCUGGUUCuCCAg -3'
miRNA:   3'- cAGGUugaCCAGGACGACCAGGuGGU- -5'
31682 5' -57.1 NC_006883.1 + 26714 0.73 0.581208
Target:  5'- uUCCAGgaGGaCCUGCUGGaccuggaguaccaguUCCACCAc -3'
miRNA:   3'- cAGGUUgaCCaGGACGACC---------------AGGUGGU- -5'
31682 5' -57.1 NC_006883.1 + 27231 0.76 0.43696
Target:  5'- gGUCCAGCaGGUCCUaCaGGUCCAUCAg -3'
miRNA:   3'- -CAGGUUGaCCAGGAcGaCCAGGUGGU- -5'
31682 5' -57.1 NC_006883.1 + 27312 0.69 0.798448
Target:  5'- gGUCCAGCaGGUCCUcCaGGUCCuCCu -3'
miRNA:   3'- -CAGGUUGaCCAGGAcGaCCAGGuGGu -5'
31682 5' -57.1 NC_006883.1 + 27384 0.69 0.798448
Target:  5'- gGUCCAGCaGGUCCUcCaGGUCCuCCu -3'
miRNA:   3'- -CAGGUUGaCCAGGAcGaCCAGGuGGu -5'
31682 5' -57.1 NC_006883.1 + 27447 0.67 0.903387
Target:  5'- gGUCCuACUGGUCCgacaGGUCCcacaggACCAa -3'
miRNA:   3'- -CAGGuUGACCAGGacgaCCAGG------UGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.