miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31682 5' -57.1 NC_006883.1 + 3029 0.7 0.743921
Target:  5'- uGUCC-AUUGGUUCUuuuuccccauCUGGUCCACCAu -3'
miRNA:   3'- -CAGGuUGACCAGGAc---------GACCAGGUGGU- -5'
31682 5' -57.1 NC_006883.1 + 21453 0.93 0.042147
Target:  5'- gGUCCuACUGGUCCUGCUGGUCCuCCAg -3'
miRNA:   3'- -CAGGuUGACCAGGACGACCAGGuGGU- -5'
31682 5' -57.1 NC_006883.1 + 21480 0.78 0.325426
Target:  5'- gGUCCAacuggaauaACUGGUCCUuCUGGUCCuCCAg -3'
miRNA:   3'- -CAGGU---------UGACCAGGAcGACCAGGuGGU- -5'
31682 5' -57.1 NC_006883.1 + 21525 0.74 0.519207
Target:  5'- gGUCCAGguggcggucCUGGUCCUGCUGGcCC-UCAa -3'
miRNA:   3'- -CAGGUU---------GACCAGGACGACCaGGuGGU- -5'
31682 5' -57.1 NC_006883.1 + 21588 0.81 0.230969
Target:  5'- gGUCCuACUGGaCCUGCUGGUCCuCCu -3'
miRNA:   3'- -CAGGuUGACCaGGACGACCAGGuGGu -5'
31682 5' -57.1 NC_006883.1 + 21612 0.69 0.823913
Target:  5'- -----nCUGGUCCUGCuggUGGUCCuCCAg -3'
miRNA:   3'- cagguuGACCAGGACG---ACCAGGuGGU- -5'
31682 5' -57.1 NC_006883.1 + 21672 0.78 0.332651
Target:  5'- gGUCCAACUGGUCCUccugGUacuggaucuccUGGUCCugCAg -3'
miRNA:   3'- -CAGGUUGACCAGGA----CG-----------ACCAGGugGU- -5'
31682 5' -57.1 NC_006883.1 + 21741 0.96 0.026144
Target:  5'- gGUCCAACUGGUCCUGCUGGUCCuacggguCCAg -3'
miRNA:   3'- -CAGGUUGACCAGGACGACCAGGu------GGU- -5'
31682 5' -57.1 NC_006883.1 + 21786 0.91 0.057791
Target:  5'- gGUCCAACUGGUCCUGCuggUGGUCCuCCAg -3'
miRNA:   3'- -CAGGUUGACCAGGACG---ACCAGGuGGU- -5'
31682 5' -57.1 NC_006883.1 + 21843 0.77 0.370524
Target:  5'- gGUCCGAgugguggagaUGGUCCUGCUGGUCCAa-- -3'
miRNA:   3'- -CAGGUUg---------ACCAGGACGACCAGGUggu -5'
31682 5' -57.1 NC_006883.1 + 21913 0.83 0.166353
Target:  5'- cUCCAGguccuagugguggucCUGGUCCUGCUGGUCCuCCAg -3'
miRNA:   3'- cAGGUU---------------GACCAGGACGACCAGGuGGU- -5'
31682 5' -57.1 NC_006883.1 + 21962 0.81 0.236473
Target:  5'- gGUCCAAgUGGUCCUcCUGGUCCugCu -3'
miRNA:   3'- -CAGGUUgACCAGGAcGACCAGGugGu -5'
31682 5' -57.1 NC_006883.1 + 22078 0.67 0.903387
Target:  5'- -aCCAGgaGGaCCUGgaGGaCCACCAg -3'
miRNA:   3'- caGGUUgaCCaGGACgaCCaGGUGGU- -5'
31682 5' -57.1 NC_006883.1 + 22878 0.92 0.049369
Target:  5'- gGUCCAACUGGUCCUGCUGGUgCuCCAg -3'
miRNA:   3'- -CAGGUUGACCAGGACGACCAgGuGGU- -5'
31682 5' -57.1 NC_006883.1 + 22905 0.78 0.325426
Target:  5'- gGUUUAACUGGaCCUGCUGGUCCugaugguCCAa -3'
miRNA:   3'- -CAGGUUGACCaGGACGACCAGGu------GGU- -5'
31682 5' -57.1 NC_006883.1 + 22950 0.76 0.419708
Target:  5'- gGUCCc-CUGGUCCUGCuggUGGUCCuCCAn -3'
miRNA:   3'- -CAGGuuGACCAGGACG---ACCAGGuGGU- -5'
31682 5' -57.1 NC_006883.1 + 22979 0.83 0.186161
Target:  5'- gGUCCAACUGGUCCUGCUGGugaugauggugcUCCugguCCu -3'
miRNA:   3'- -CAGGUUGACCAGGACGACC------------AGGu---GGu -5'
31682 5' -57.1 NC_006883.1 + 23042 0.81 0.220283
Target:  5'- gGUCCAACUGGUCCucaagguccUGCUGGUUCuCCAn -3'
miRNA:   3'- -CAGGUUGACCAGG---------ACGACCAGGuGGU- -5'
31682 5' -57.1 NC_006883.1 + 23078 0.85 0.131666
Target:  5'- gGUCCAACUGGUCCUGUaGGUCCuucaaauCCAg -3'
miRNA:   3'- -CAGGUUGACCAGGACGaCCAGGu------GGU- -5'
31682 5' -57.1 NC_006883.1 + 23111 0.69 0.832083
Target:  5'- gGUCCAACUGGUCCcaCaGGUcCCACa- -3'
miRNA:   3'- -CAGGUUGACCAGGacGaCCA-GGUGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.