miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31682 5' -57.1 NC_006883.1 + 26513 1.08 0.003998
Target:  5'- gGUCCAACUGGUCCUGCUGGUCCACCAg -3'
miRNA:   3'- -CAGGUUGACCAGGACGACCAGGUGGU- -5'
31682 5' -57.1 NC_006883.1 + 26540 1 0.014525
Target:  5'- gGUCCAACUGGUCCUGCUGGUCC-CCAa -3'
miRNA:   3'- -CAGGUUGACCAGGACGACCAGGuGGU- -5'
31682 5' -57.1 NC_006883.1 + 21741 0.96 0.026144
Target:  5'- gGUCCAACUGGUCCUGCUGGUCCuacggguCCAg -3'
miRNA:   3'- -CAGGUUGACCAGGACGACCAGGu------GGU- -5'
31682 5' -57.1 NC_006883.1 + 27956 0.95 0.028318
Target:  5'- gGUCCGACUGGUCCUGCUGGUCCuACUg -3'
miRNA:   3'- -CAGGUUGACCAGGACGACCAGG-UGGu -5'
31682 5' -57.1 NC_006883.1 + 26351 0.94 0.036926
Target:  5'- gGUCCAACUGGUCCUGCUGGUcCCACa- -3'
miRNA:   3'- -CAGGUUGACCAGGACGACCA-GGUGgu -5'
31682 5' -57.1 NC_006883.1 + 21453 0.93 0.042147
Target:  5'- gGUCCuACUGGUCCUGCUGGUCCuCCAg -3'
miRNA:   3'- -CAGGuUGACCAGGACGACCAGGuGGU- -5'
31682 5' -57.1 NC_006883.1 + 22878 0.92 0.049369
Target:  5'- gGUCCAACUGGUCCUGCUGGUgCuCCAg -3'
miRNA:   3'- -CAGGUUGACCAGGACGACCAgGuGGU- -5'
31682 5' -57.1 NC_006883.1 + 21786 0.91 0.057791
Target:  5'- gGUCCAACUGGUCCUGCuggUGGUCCuCCAg -3'
miRNA:   3'- -CAGGUUGACCAGGACG---ACCAGGuGGU- -5'
31682 5' -57.1 NC_006883.1 + 28070 0.91 0.057791
Target:  5'- gGUCCAggcggaACUGGUCCUGCUGGUCCuCCAg -3'
miRNA:   3'- -CAGGU------UGACCAGGACGACCAGGuGGU- -5'
31682 5' -57.1 NC_006883.1 + 222714 0.87 0.099601
Target:  5'- gGUUCAcCUGGUCCUGCUGGUUCGCCu -3'
miRNA:   3'- -CAGGUuGACCAGGACGACCAGGUGGu -5'
31682 5' -57.1 NC_006883.1 + 23078 0.85 0.131666
Target:  5'- gGUCCAACUGGUCCUGUaGGUCCuucaaauCCAg -3'
miRNA:   3'- -CAGGUUGACCAGGACGaCCAGGu------GGU- -5'
31682 5' -57.1 NC_006883.1 + 27903 0.85 0.135013
Target:  5'- gGUCCAACUGGUCCUGCUGGUgCugaCGg -3'
miRNA:   3'- -CAGGUUGACCAGGACGACCAgGug-GU- -5'
31682 5' -57.1 NC_006883.1 + 222669 0.84 0.149196
Target:  5'- gGUUCucCUGGUCCUGCUGGUCCugCu -3'
miRNA:   3'- -CAGGuuGACCAGGACGACCAGGugGu -5'
31682 5' -57.1 NC_006883.1 + 21913 0.83 0.166353
Target:  5'- cUCCAGguccuagugguggucCUGGUCCUGCUGGUCCuCCAg -3'
miRNA:   3'- cAGGUU---------------GACCAGGACGACCAGGuGGU- -5'
31682 5' -57.1 NC_006883.1 + 22979 0.83 0.186161
Target:  5'- gGUCCAACUGGUCCUGCUGGugaugauggugcUCCugguCCu -3'
miRNA:   3'- -CAGGUUGACCAGGACGACC------------AGGu---GGu -5'
31682 5' -57.1 NC_006883.1 + 27492 0.83 0.186161
Target:  5'- gGUCCAACUGGUCCUGCUGGagCAa-- -3'
miRNA:   3'- -CAGGUUGACCAGGACGACCagGUggu -5'
31682 5' -57.1 NC_006883.1 + 23042 0.81 0.220283
Target:  5'- gGUCCAACUGGUCCucaagguccUGCUGGUUCuCCAn -3'
miRNA:   3'- -CAGGUUGACCAGG---------ACGACCAGGuGGU- -5'
31682 5' -57.1 NC_006883.1 + 21588 0.81 0.230969
Target:  5'- gGUCCuACUGGaCCUGCUGGUCCuCCu -3'
miRNA:   3'- -CAGGuUGACCaGGACGACCAGGuGGu -5'
31682 5' -57.1 NC_006883.1 + 21962 0.81 0.236473
Target:  5'- gGUCCAAgUGGUCCUcCUGGUCCugCu -3'
miRNA:   3'- -CAGGUUgACCAGGAcGACCAGGugGu -5'
31682 5' -57.1 NC_006883.1 + 222777 0.8 0.259598
Target:  5'- gGUCCuucuGgUGGUCCUGUUGGUCCuCCAg -3'
miRNA:   3'- -CAGGu---UgACCAGGACGACCAGGuGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.