Results 1 - 20 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31683 | 3' | -55.4 | NC_006883.1 | + | 27458 | 1.12 | 0.004704 |
Target: 5'- uCCGACAGGUCCCACAGGACCAACUGGu -3' miRNA: 3'- -GGCUGUCCAGGGUGUCCUGGUUGACC- -5' |
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31683 | 3' | -55.4 | NC_006883.1 | + | 23122 | 0.94 | 0.060284 |
Target: 5'- uCCcACAGGUCCCACAGGuCCAACUGGa -3' miRNA: 3'- -GGcUGUCCAGGGUGUCCuGGUUGACC- -5' |
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31683 | 3' | -55.4 | NC_006883.1 | + | 23647 | 0.9 | 0.113854 |
Target: 5'- uCCaGCAGGUCCUACAGGuCCAACUGGu -3' miRNA: 3'- -GGcUGUCCAGGGUGUCCuGGUUGACC- -5' |
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31683 | 3' | -55.4 | NC_006883.1 | + | 21770 | 0.83 | 0.282518 |
Target: 5'- uCCaGAC-GGUCCUACAGGuCCAACUGGu -3' miRNA: 3'- -GG-CUGuCCAGGGUGUCCuGGUUGACC- -5' |
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31683 | 3' | -55.4 | NC_006883.1 | + | 26272 | 0.81 | 0.336818 |
Target: 5'- uCCaGCAGGUCCUACAGGuCCAGCaGGu -3' miRNA: 3'- -GGcUGUCCAGGGUGUCCuGGUUGaCC- -5' |
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31683 | 3' | -55.4 | NC_006883.1 | + | 27851 | 0.8 | 0.390262 |
Target: 5'- uCCuACAGGaCCUACAGGuCCAACUGGu -3' miRNA: 3'- -GGcUGUCCaGGGUGUCCuGGUUGACC- -5' |
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31683 | 3' | -55.4 | NC_006883.1 | + | 26362 | 0.79 | 0.431681 |
Target: 5'- uCCuGCuGGUCCCACAGGuggaacugguCCAACUGGu -3' miRNA: 3'- -GGcUGuCCAGGGUGUCCu---------GGUUGACC- -5' |
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31683 | 3' | -55.4 | NC_006883.1 | + | 24679 | 0.79 | 0.440269 |
Target: 5'- uCCucCAGGUCCUACAGGuCCAAgUGGu -3' miRNA: 3'- -GGcuGUCCAGGGUGUCCuGGUUgACC- -5' |
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31683 | 3' | -55.4 | NC_006883.1 | + | 26498 | 0.77 | 0.549955 |
Target: 5'- gCaACuGGUCCUGCAGGuCCAACUGGu -3' miRNA: 3'- gGcUGuCCAGGGUGUCCuGGUUGACC- -5' |
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31683 | 3' | -55.4 | NC_006883.1 | + | 27958 | 0.76 | 0.56916 |
Target: 5'- uCCGACuGGUCCUGCuGGuCCuACUGGu -3' miRNA: 3'- -GGCUGuCCAGGGUGuCCuGGuUGACC- -5' |
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31683 | 3' | -55.4 | NC_006883.1 | + | 21464 | 0.76 | 0.608006 |
Target: 5'- uCCuGCuGGUCCUcCAGGuCCAACUGGa -3' miRNA: 3'- -GGcUGuCCAGGGuGUCCuGGUUGACC- -5' |
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31683 | 3' | -55.4 | NC_006883.1 | + | 23323 | 0.75 | 0.627553 |
Target: 5'- aCCaGCAGGaCCUugAGGACCAGUUGGa -3' miRNA: 3'- -GGcUGUCCaGGGugUCCUGGUUGACC- -5' |
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31683 | 3' | -55.4 | NC_006883.1 | + | 22860 | 0.75 | 0.656879 |
Target: 5'- cCCGAucCAGGUgCUcCAGGuCCAACUGGu -3' miRNA: 3'- -GGCU--GUCCAgGGuGUCCuGGUUGACC- -5' |
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31683 | 3' | -55.4 | NC_006883.1 | + | 21572 | 0.74 | 0.705293 |
Target: 5'- uCCGAgugguggucCuGGUCCUACuGGACCuGCUGGu -3' miRNA: 3'- -GGCU---------GuCCAGGGUGuCCUGGuUGACC- -5' |
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31683 | 3' | -55.4 | NC_006883.1 | + | 28366 | 0.74 | 0.714837 |
Target: 5'- aCCaGgAGGUCCUGgAGGACCAGCaGGa -3' miRNA: 3'- -GGcUgUCCAGGGUgUCCUGGUUGaCC- -5' |
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31683 | 3' | -55.4 | NC_006883.1 | + | 27824 | 0.74 | 0.714837 |
Target: 5'- uCCuGCuGGUCCUcCAGGuCCAACUGGn -3' miRNA: 3'- -GGcUGuCCAGGGuGUCCuGGUUGACC- -5' |
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31683 | 3' | -55.4 | NC_006883.1 | + | 27233 | 0.74 | 0.714837 |
Target: 5'- uCCaGCAGGUCCUACAGGuCCAuCaGGu -3' miRNA: 3'- -GGcUGUCCAGGGUGUCCuGGUuGaCC- -5' |
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31683 | 3' | -55.4 | NC_006883.1 | + | 23446 | 0.74 | 0.724317 |
Target: 5'- uCCaGCAGGUCCUcCAGGuCCAGCaGGu -3' miRNA: 3'- -GGcUGUCCAGGGuGUCCuGGUUGaCC- -5' |
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31683 | 3' | -55.4 | NC_006883.1 | + | 27483 | 0.73 | 0.75229 |
Target: 5'- ------nGUCCCACAGGuCCAACUGGu -3' miRNA: 3'- ggcugucCAGGGUGUCCuGGUUGACC- -5' |
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31683 | 3' | -55.4 | NC_006883.1 | + | 21655 | 0.73 | 0.761432 |
Target: 5'- gUGAUgcuGGUCCaACAGGuCCAACUGGu -3' miRNA: 3'- gGCUGu--CCAGGgUGUCCuGGUUGACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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