miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31683 3' -55.4 NC_006883.1 + 28087 0.72 0.788198
Target:  5'- uCCuGCuGGUCCUcCAGGACCucCUGGu -3'
miRNA:   3'- -GGcUGuCCAGGGuGUCCUGGuuGACC- -5'
31683 3' -55.4 NC_006883.1 + 21572 0.74 0.705293
Target:  5'- uCCGAgugguggucCuGGUCCUACuGGACCuGCUGGu -3'
miRNA:   3'- -GGCU---------GuCCAGGGUGuCCUGGuUGACC- -5'
31683 3' -55.4 NC_006883.1 + 27233 0.74 0.714837
Target:  5'- uCCaGCAGGUCCUACAGGuCCAuCaGGu -3'
miRNA:   3'- -GGcUGUCCAGGGUGUCCuGGUuGaCC- -5'
31683 3' -55.4 NC_006883.1 + 27824 0.74 0.714837
Target:  5'- uCCuGCuGGUCCUcCAGGuCCAACUGGn -3'
miRNA:   3'- -GGcUGuCCAGGGuGUCCuGGUUGACC- -5'
31683 3' -55.4 NC_006883.1 + 23446 0.74 0.724317
Target:  5'- uCCaGCAGGUCCUcCAGGuCCAGCaGGu -3'
miRNA:   3'- -GGcUGUCCAGGGuGUCCuGGUUGaCC- -5'
31683 3' -55.4 NC_006883.1 + 27483 0.73 0.75229
Target:  5'- ------nGUCCCACAGGuCCAACUGGu -3'
miRNA:   3'- ggcugucCAGGGUGUCCuGGUUGACC- -5'
31683 3' -55.4 NC_006883.1 + 21655 0.73 0.761432
Target:  5'- gUGAUgcuGGUCCaACAGGuCCAACUGGu -3'
miRNA:   3'- gGCUGu--CCAGGgUGUCCuGGUUGACC- -5'
31683 3' -55.4 NC_006883.1 + 27314 0.72 0.779394
Target:  5'- uCCaGCAGGUCCUcCAGGuCCucCUGGa -3'
miRNA:   3'- -GGcUGUCCAGGGuGUCCuGGuuGACC- -5'
31683 3' -55.4 NC_006883.1 + 27386 0.72 0.779394
Target:  5'- uCCaGCAGGUCCUcCAGGuCCucCUGGa -3'
miRNA:   3'- -GGcUGUCCAGGGuGUCCuGGuuGACC- -5'
31683 3' -55.4 NC_006883.1 + 22860 0.75 0.656879
Target:  5'- cCCGAucCAGGUgCUcCAGGuCCAACUGGu -3'
miRNA:   3'- -GGCU--GUCCAgGGuGUCCuGGUUGACC- -5'
31683 3' -55.4 NC_006883.1 + 21464 0.76 0.608006
Target:  5'- uCCuGCuGGUCCUcCAGGuCCAACUGGa -3'
miRNA:   3'- -GGcUGuCCAGGGuGUCCuGGUUGACC- -5'
31683 3' -55.4 NC_006883.1 + 27958 0.76 0.56916
Target:  5'- uCCGACuGGUCCUGCuGGuCCuACUGGu -3'
miRNA:   3'- -GGCUGuCCAGGGUGuCCuGGuUGACC- -5'
31683 3' -55.4 NC_006883.1 + 23122 0.94 0.060284
Target:  5'- uCCcACAGGUCCCACAGGuCCAACUGGa -3'
miRNA:   3'- -GGcUGUCCAGGGUGUCCuGGUUGACC- -5'
31683 3' -55.4 NC_006883.1 + 23647 0.9 0.113854
Target:  5'- uCCaGCAGGUCCUACAGGuCCAACUGGu -3'
miRNA:   3'- -GGcUGUCCAGGGUGUCCuGGUUGACC- -5'
31683 3' -55.4 NC_006883.1 + 21770 0.83 0.282518
Target:  5'- uCCaGAC-GGUCCUACAGGuCCAACUGGu -3'
miRNA:   3'- -GG-CUGuCCAGGGUGUCCuGGUUGACC- -5'
31683 3' -55.4 NC_006883.1 + 26272 0.81 0.336818
Target:  5'- uCCaGCAGGUCCUACAGGuCCAGCaGGu -3'
miRNA:   3'- -GGcUGUCCAGGGUGUCCuGGUUGaCC- -5'
31683 3' -55.4 NC_006883.1 + 27851 0.8 0.390262
Target:  5'- uCCuACAGGaCCUACAGGuCCAACUGGu -3'
miRNA:   3'- -GGcUGUCCaGGGUGUCCuGGUUGACC- -5'
31683 3' -55.4 NC_006883.1 + 26362 0.79 0.431681
Target:  5'- uCCuGCuGGUCCCACAGGuggaacugguCCAACUGGu -3'
miRNA:   3'- -GGcUGuCCAGGGUGUCCu---------GGUUGACC- -5'
31683 3' -55.4 NC_006883.1 + 24679 0.79 0.440269
Target:  5'- uCCucCAGGUCCUACAGGuCCAAgUGGu -3'
miRNA:   3'- -GGcuGUCCAGGGUGUCCuGGUUgACC- -5'
31683 3' -55.4 NC_006883.1 + 26498 0.77 0.549955
Target:  5'- gCaACuGGUCCUGCAGGuCCAACUGGu -3'
miRNA:   3'- gGcUGuCCAGGGUGUCCuGGUUGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.