miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31683 5' -54.7 NC_006883.1 + 134593 0.66 0.974002
Target:  5'- uUCUAcuACUGGUUCUGgUGGuGUAGGu -3'
miRNA:   3'- cAGGU--UGACCAGGACgACCuCGUUCu -5'
31683 5' -54.7 NC_006883.1 + 28001 0.66 0.974002
Target:  5'- gGUCCAACUGGUCCagGC-GGAa----- -3'
miRNA:   3'- -CAGGUUGACCAGGa-CGaCCUcguucu -5'
31683 5' -54.7 NC_006883.1 + 23410 0.66 0.965278
Target:  5'- -aCCAuCUGGUCCaGUUGGAccuGUggGAc -3'
miRNA:   3'- caGGUuGACCAGGaCGACCU---CGuuCU- -5'
31683 5' -54.7 NC_006883.1 + 22216 0.67 0.96196
Target:  5'- -aCCAuCUGGaCCUGgaGGAccaGCAGGAc -3'
miRNA:   3'- caGGUuGACCaGGACgaCCU---CGUUCU- -5'
31683 5' -54.7 NC_006883.1 + 27285 0.67 0.954678
Target:  5'- gGUCCAGgUGGUCCaGgUGGuGGCAcAGGu -3'
miRNA:   3'- -CAGGUUgACCAGGaCgACC-UCGU-UCU- -5'
31683 5' -54.7 NC_006883.1 + 26714 0.67 0.950705
Target:  5'- uUCCAGgaGGaCCUGCUGGAcCuGGAg -3'
miRNA:   3'- cAGGUUgaCCaGGACGACCUcGuUCU- -5'
31683 5' -54.7 NC_006883.1 + 26598 0.67 0.950705
Target:  5'- cUCCAuCUGGUCCuucaacUGCUGGugauuuauGGUggGAa -3'
miRNA:   3'- cAGGUuGACCAGG------ACGACC--------UCGuuCU- -5'
31683 5' -54.7 NC_006883.1 + 23462 0.67 0.950705
Target:  5'- gGUCCAGCaGGUCCUcCUGGAucugguggugguGCAAa- -3'
miRNA:   3'- -CAGGUUGaCCAGGAcGACCU------------CGUUcu -5'
31683 5' -54.7 NC_006883.1 + 21744 0.67 0.946506
Target:  5'- uUCCAGUUGGaCCUGgaGGAccaGCAGGAc -3'
miRNA:   3'- cAGGUUGACCaGGACgaCCU---CGUUCU- -5'
31683 5' -54.7 NC_006883.1 + 26288 0.67 0.945639
Target:  5'- gGUCCAGCaGGUCCUccuggaaaugaUGGAGCAGa- -3'
miRNA:   3'- -CAGGUUGaCCAGGAcg---------ACCUCGUUcu -5'
31683 5' -54.7 NC_006883.1 + 26484 0.68 0.942078
Target:  5'- ------aUGGUCCUGCUGGuGCAAc- -3'
miRNA:   3'- cagguugACCAGGACGACCuCGUUcu -5'
31683 5' -54.7 NC_006883.1 + 23735 0.68 0.932527
Target:  5'- aUCCAGgaGGaCCUGCUGGAccuGgAGGAc -3'
miRNA:   3'- cAGGUUgaCCaGGACGACCU---CgUUCU- -5'
31683 5' -54.7 NC_006883.1 + 21913 0.68 0.923674
Target:  5'- cUCCAGguccuagugguggucCUGGUCCUGCUGGuccuccaGGUcAGAu -3'
miRNA:   3'- cAGGUU---------------GACCAGGACGACC-------UCGuUCU- -5'
31683 5' -54.7 NC_006883.1 + 26441 0.68 0.9153
Target:  5'- gGUCCAGCaGGUCCUccuggaaaugaUGGAGCAgauGGAa -3'
miRNA:   3'- -CAGGUUGaCCAGGAcg---------ACCUCGU---UCU- -5'
31683 5' -54.7 NC_006883.1 + 91980 0.69 0.898274
Target:  5'- uUCUAcuGCacaaGGUUCUGgUGGAGCAGGAa -3'
miRNA:   3'- cAGGU--UGa---CCAGGACgACCUCGUUCU- -5'
31683 5' -54.7 NC_006883.1 + 28244 0.7 0.880874
Target:  5'- gGUCCGACUGGUCCaaCUGGuccaacagguccuucAGguGGAa -3'
miRNA:   3'- -CAGGUUGACCAGGacGACC---------------UCguUCU- -5'
31683 5' -54.7 NC_006883.1 + 22950 0.7 0.840167
Target:  5'- gGUCCc-CUGGUCCUGCUGGuGGUc--- -3'
miRNA:   3'- -CAGGuuGACCAGGACGACC-UCGuucu -5'
31683 5' -54.7 NC_006883.1 + 23078 0.71 0.832005
Target:  5'- nGUCCAACUGGUCCUGUaGGuccuuCAAa- -3'
miRNA:   3'- -CAGGUUGACCAGGACGaCCuc---GUUcu -5'
31683 5' -54.7 NC_006883.1 + 21843 0.71 0.823666
Target:  5'- gGUCCGAgugguggagaUGGUCCUGCUGGucCAAGu -3'
miRNA:   3'- -CAGGUUg---------ACCAGGACGACCucGUUCu -5'
31683 5' -54.7 NC_006883.1 + 27867 0.72 0.779571
Target:  5'- gGUCCAACUGGUCCaaCUGGuccuucAGguGGAa -3'
miRNA:   3'- -CAGGUUGACCAGGacGACC------UCguUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.