miRNA display CGI


Results 21 - 40 of 46 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31683 5' -54.7 NC_006883.1 + 26288 0.67 0.945639
Target:  5'- gGUCCAGCaGGUCCUccuggaaaugaUGGAGCAGa- -3'
miRNA:   3'- -CAGGUUGaCCAGGAcg---------ACCUCGUUcu -5'
31683 5' -54.7 NC_006883.1 + 26351 0.89 0.113146
Target:  5'- gGUCCAACUGGUCCUGCUGGucccacAGguGGAa -3'
miRNA:   3'- -CAGGUUGACCAGGACGACC------UCguUCU- -5'
31683 5' -54.7 NC_006883.1 + 26441 0.68 0.9153
Target:  5'- gGUCCAGCaGGUCCUccuggaaaugaUGGAGCAgauGGAa -3'
miRNA:   3'- -CAGGUUGaCCAGGAcg---------ACCUCGU---UCU- -5'
31683 5' -54.7 NC_006883.1 + 26484 0.68 0.942078
Target:  5'- ------aUGGUCCUGCUGGuGCAAc- -3'
miRNA:   3'- cagguugACCAGGACGACCuCGUUcu -5'
31683 5' -54.7 NC_006883.1 + 26513 0.84 0.212589
Target:  5'- gGUCCAACUGGUCCUGCUGGucCAc-- -3'
miRNA:   3'- -CAGGUUGACCAGGACGACCucGUucu -5'
31683 5' -54.7 NC_006883.1 + 26540 0.89 0.107422
Target:  5'- gGUCCAACUGGUCCUGCUGGucccCAAGGu -3'
miRNA:   3'- -CAGGUUGACCAGGACGACCuc--GUUCU- -5'
31683 5' -54.7 NC_006883.1 + 26561 0.72 0.751494
Target:  5'- uUCCAGgaGGaCCUGCUGGAccuGUAGGAc -3'
miRNA:   3'- cAGGUUgaCCaGGACGACCU---CGUUCU- -5'
31683 5' -54.7 NC_006883.1 + 26598 0.67 0.950705
Target:  5'- cUCCAuCUGGUCCuucaacUGCUGGugauuuauGGUggGAa -3'
miRNA:   3'- cAGGUuGACCAGG------ACGACC--------UCGuuCU- -5'
31683 5' -54.7 NC_006883.1 + 26714 0.67 0.950705
Target:  5'- uUCCAGgaGGaCCUGCUGGAcCuGGAg -3'
miRNA:   3'- cAGGUUgaCCaGGACGACCUcGuUCU- -5'
31683 5' -54.7 NC_006883.1 + 27285 0.67 0.954678
Target:  5'- gGUCCAGgUGGUCCaGgUGGuGGCAcAGGu -3'
miRNA:   3'- -CAGGUUgACCAGGaCgACC-UCGU-UCU- -5'
31683 5' -54.7 NC_006883.1 + 27492 1.09 0.005635
Target:  5'- gGUCCAACUGGUCCUGCUGGAGCAAGAa -3'
miRNA:   3'- -CAGGUUGACCAGGACGACCUCGUUCU- -5'
31683 5' -54.7 NC_006883.1 + 27867 0.72 0.779571
Target:  5'- gGUCCAACUGGUCCaaCUGGuccuucAGguGGAa -3'
miRNA:   3'- -CAGGUUGACCAGGacGACC------UCguUCU- -5'
31683 5' -54.7 NC_006883.1 + 27903 0.91 0.074379
Target:  5'- gGUCCAACUGGUCCUGCUGGuGCugacGGAa -3'
miRNA:   3'- -CAGGUUGACCAGGACGACCuCGu---UCU- -5'
31683 5' -54.7 NC_006883.1 + 27956 0.87 0.135497
Target:  5'- gGUCCGACUGGUCCUGCUGGuccuacuGguGGAg -3'
miRNA:   3'- -CAGGUUGACCAGGACGACCu------CguUCU- -5'
31683 5' -54.7 NC_006883.1 + 28001 0.66 0.974002
Target:  5'- gGUCCAACUGGUCCagGC-GGAa----- -3'
miRNA:   3'- -CAGGUUGACCAGGa-CGaCCUcguucu -5'
31683 5' -54.7 NC_006883.1 + 28025 0.73 0.692803
Target:  5'- gGUCCAACUGGUCCUaCUGGuGau-GAu -3'
miRNA:   3'- -CAGGUUGACCAGGAcGACCuCguuCU- -5'
31683 5' -54.7 NC_006883.1 + 28070 0.79 0.386768
Target:  5'- gGUCCAggcggaACUGGUCCUGCUGGuccucCAGGAc -3'
miRNA:   3'- -CAGGU------UGACCAGGACGACCuc---GUUCU- -5'
31683 5' -54.7 NC_006883.1 + 28244 0.7 0.880874
Target:  5'- gGUCCGACUGGUCCaaCUGGuccaacagguccuucAGguGGAa -3'
miRNA:   3'- -CAGGUUGACCAGGacGACC---------------UCguUCU- -5'
31683 5' -54.7 NC_006883.1 + 28366 0.73 0.70276
Target:  5'- -aCCAGgaGGUCCUGgaGGAccaGCAGGAc -3'
miRNA:   3'- caGGUUgaCCAGGACgaCCU---CGUUCU- -5'
31683 5' -54.7 NC_006883.1 + 31571 0.72 0.779571
Target:  5'- uUCCAccuaaucuaaaaGCUGGUCCUGCUGGu---GGAu -3'
miRNA:   3'- cAGGU------------UGACCAGGACGACCucguUCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.