miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31683 5' -54.7 NC_006883.1 + 222807 0.84 0.223172
Target:  5'- gGUCCucCUGGUCCUGCUGGuGguGGAa -3'
miRNA:   3'- -CAGGuuGACCAGGACGACCuCguUCU- -5'
31683 5' -54.7 NC_006883.1 + 222741 0.72 0.751494
Target:  5'- nGUgCAACUGGUCCUGUUGGAa----- -3'
miRNA:   3'- -CAgGUUGACCAGGACGACCUcguucu -5'
31683 5' -54.7 NC_006883.1 + 222714 0.73 0.712659
Target:  5'- gGUUCAcCUGGUCCUGCUGGuucGCcuGGu -3'
miRNA:   3'- -CAGGUuGACCAGGACGACCu--CGuuCU- -5'
31683 5' -54.7 NC_006883.1 + 222678 0.78 0.42947
Target:  5'- gGUCCuGCUGGUCCUGCUGGu---GGAa -3'
miRNA:   3'- -CAGGuUGACCAGGACGACCucguUCU- -5'
31683 5' -54.7 NC_006883.1 + 134593 0.66 0.974002
Target:  5'- uUCUAcuACUGGUUCUGgUGGuGUAGGu -3'
miRNA:   3'- cAGGU--UGACCAGGACgACCuCGUUCu -5'
31683 5' -54.7 NC_006883.1 + 91980 0.69 0.898274
Target:  5'- uUCUAcuGCacaaGGUUCUGgUGGAGCAGGAa -3'
miRNA:   3'- cAGGU--UGa---CCAGGACgACCUCGUUCU- -5'
31683 5' -54.7 NC_006883.1 + 31571 0.72 0.779571
Target:  5'- uUCCAccuaaucuaaaaGCUGGUCCUGCUGGu---GGAu -3'
miRNA:   3'- cAGGU------------UGACCAGGACGACCucguUCU- -5'
31683 5' -54.7 NC_006883.1 + 28366 0.73 0.70276
Target:  5'- -aCCAGgaGGUCCUGgaGGAccaGCAGGAc -3'
miRNA:   3'- caGGUUgaCCAGGACgaCCU---CGUUCU- -5'
31683 5' -54.7 NC_006883.1 + 28244 0.7 0.880874
Target:  5'- gGUCCGACUGGUCCaaCUGGuccaacagguccuucAGguGGAa -3'
miRNA:   3'- -CAGGUUGACCAGGacGACC---------------UCguUCU- -5'
31683 5' -54.7 NC_006883.1 + 28070 0.79 0.386768
Target:  5'- gGUCCAggcggaACUGGUCCUGCUGGuccucCAGGAc -3'
miRNA:   3'- -CAGGU------UGACCAGGACGACCuc---GUUCU- -5'
31683 5' -54.7 NC_006883.1 + 28025 0.73 0.692803
Target:  5'- gGUCCAACUGGUCCUaCUGGuGau-GAu -3'
miRNA:   3'- -CAGGUUGACCAGGAcGACCuCguuCU- -5'
31683 5' -54.7 NC_006883.1 + 28001 0.66 0.974002
Target:  5'- gGUCCAACUGGUCCagGC-GGAa----- -3'
miRNA:   3'- -CAGGUUGACCAGGa-CGaCCUcguucu -5'
31683 5' -54.7 NC_006883.1 + 27956 0.87 0.135497
Target:  5'- gGUCCGACUGGUCCUGCUGGuccuacuGguGGAg -3'
miRNA:   3'- -CAGGUUGACCAGGACGACCu------CguUCU- -5'
31683 5' -54.7 NC_006883.1 + 27903 0.91 0.074379
Target:  5'- gGUCCAACUGGUCCUGCUGGuGCugacGGAa -3'
miRNA:   3'- -CAGGUUGACCAGGACGACCuCGu---UCU- -5'
31683 5' -54.7 NC_006883.1 + 27867 0.72 0.779571
Target:  5'- gGUCCAACUGGUCCaaCUGGuccuucAGguGGAa -3'
miRNA:   3'- -CAGGUUGACCAGGacGACC------UCguUCU- -5'
31683 5' -54.7 NC_006883.1 + 27492 1.09 0.005635
Target:  5'- gGUCCAACUGGUCCUGCUGGAGCAAGAa -3'
miRNA:   3'- -CAGGUUGACCAGGACGACCUCGUUCU- -5'
31683 5' -54.7 NC_006883.1 + 27285 0.67 0.954678
Target:  5'- gGUCCAGgUGGUCCaGgUGGuGGCAcAGGu -3'
miRNA:   3'- -CAGGUUgACCAGGaCgACC-UCGU-UCU- -5'
31683 5' -54.7 NC_006883.1 + 26714 0.67 0.950705
Target:  5'- uUCCAGgaGGaCCUGCUGGAcCuGGAg -3'
miRNA:   3'- cAGGUUgaCCaGGACGACCUcGuUCU- -5'
31683 5' -54.7 NC_006883.1 + 26598 0.67 0.950705
Target:  5'- cUCCAuCUGGUCCuucaacUGCUGGugauuuauGGUggGAa -3'
miRNA:   3'- cAGGUuGACCAGG------ACGACC--------UCGuuCU- -5'
31683 5' -54.7 NC_006883.1 + 26561 0.72 0.751494
Target:  5'- uUCCAGgaGGaCCUGCUGGAccuGUAGGAc -3'
miRNA:   3'- cAGGUUgaCCaGGACGACCU---CGUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.