Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31683 | 5' | -54.7 | NC_006883.1 | + | 134593 | 0.66 | 0.974002 |
Target: 5'- uUCUAcuACUGGUUCUGgUGGuGUAGGu -3' miRNA: 3'- cAGGU--UGACCAGGACgACCuCGUUCu -5' |
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31683 | 5' | -54.7 | NC_006883.1 | + | 21744 | 0.67 | 0.946506 |
Target: 5'- uUCCAGUUGGaCCUGgaGGAccaGCAGGAc -3' miRNA: 3'- cAGGUUGACCaGGACgaCCU---CGUUCU- -5' |
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31683 | 5' | -54.7 | NC_006883.1 | + | 26561 | 0.72 | 0.751494 |
Target: 5'- uUCCAGgaGGaCCUGCUGGAccuGUAGGAc -3' miRNA: 3'- cAGGUUgaCCaGGACGACCU---CGUUCU- -5' |
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31683 | 5' | -54.7 | NC_006883.1 | + | 26714 | 0.67 | 0.950705 |
Target: 5'- uUCCAGgaGGaCCUGCUGGAcCuGGAg -3' miRNA: 3'- cAGGUUgaCCaGGACGACCUcGuUCU- -5' |
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31683 | 5' | -54.7 | NC_006883.1 | + | 23735 | 0.68 | 0.932527 |
Target: 5'- aUCCAGgaGGaCCUGCUGGAccuGgAGGAc -3' miRNA: 3'- cAGGUUgaCCaGGACGACCU---CgUUCU- -5' |
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31683 | 5' | -54.7 | NC_006883.1 | + | 28366 | 0.73 | 0.70276 |
Target: 5'- -aCCAGgaGGUCCUGgaGGAccaGCAGGAc -3' miRNA: 3'- caGGUUgaCCAGGACgaCCU---CGUUCU- -5' |
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31683 | 5' | -54.7 | NC_006883.1 | + | 22216 | 0.67 | 0.96196 |
Target: 5'- -aCCAuCUGGaCCUGgaGGAccaGCAGGAc -3' miRNA: 3'- caGGUuGACCaGGACgaCCU---CGUUCU- -5' |
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31683 | 5' | -54.7 | NC_006883.1 | + | 23410 | 0.66 | 0.965278 |
Target: 5'- -aCCAuCUGGUCCaGUUGGAccuGUggGAc -3' miRNA: 3'- caGGUuGACCAGGaCGACCU---CGuuCU- -5' |
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31683 | 5' | -54.7 | NC_006883.1 | + | 21672 | 0.74 | 0.682796 |
Target: 5'- gGUCCAACUGGUCCUcCUGGuacuGGAu -3' miRNA: 3'- -CAGGUUGACCAGGAcGACCucguUCU- -5' |
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31683 | 5' | -54.7 | NC_006883.1 | + | 28025 | 0.73 | 0.692803 |
Target: 5'- gGUCCAACUGGUCCUaCUGGuGau-GAu -3' miRNA: 3'- -CAGGUUGACCAGGAcGACCuCguuCU- -5' |
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31683 | 5' | -54.7 | NC_006883.1 | + | 222678 | 0.78 | 0.42947 |
Target: 5'- gGUCCuGCUGGUCCUGCUGGu---GGAa -3' miRNA: 3'- -CAGGuUGACCAGGACGACCucguUCU- -5' |
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31683 | 5' | -54.7 | NC_006883.1 | + | 21606 | 0.78 | 0.421579 |
Target: 5'- gGUCCucCUGGUCCUGCUGGugguccuccagguccGCAAGGu -3' miRNA: 3'- -CAGGuuGACCAGGACGACCu--------------CGUUCU- -5' |
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31683 | 5' | -54.7 | NC_006883.1 | + | 28070 | 0.79 | 0.386768 |
Target: 5'- gGUCCAggcggaACUGGUCCUGCUGGuccucCAGGAc -3' miRNA: 3'- -CAGGU------UGACCAGGACGACCuc---GUUCU- -5' |
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31683 | 5' | -54.7 | NC_006883.1 | + | 23681 | 0.8 | 0.362526 |
Target: 5'- gGUCCGACUGGUUCUGCUGGuauuGGAu -3' miRNA: 3'- -CAGGUUGACCAGGACGACCucguUCU- -5' |
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31683 | 5' | -54.7 | NC_006883.1 | + | 21741 | 0.83 | 0.22863 |
Target: 5'- gGUCCAACUGGUCCUGCUGGuccuaCGGGu -3' miRNA: 3'- -CAGGUUGACCAGGACGACCuc---GUUCu -5' |
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31683 | 5' | -54.7 | NC_006883.1 | + | 222807 | 0.84 | 0.223172 |
Target: 5'- gGUCCucCUGGUCCUGCUGGuGguGGAa -3' miRNA: 3'- -CAGGuuGACCAGGACGACCuCguUCU- -5' |
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31683 | 5' | -54.7 | NC_006883.1 | + | 22979 | 0.85 | 0.174489 |
Target: 5'- gGUCCAACUGGUCCUGCUGGuGau-GAu -3' miRNA: 3'- -CAGGUUGACCAGGACGACCuCguuCU- -5' |
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31683 | 5' | -54.7 | NC_006883.1 | + | 27956 | 0.87 | 0.135497 |
Target: 5'- gGUCCGACUGGUCCUGCUGGuccuacuGguGGAg -3' miRNA: 3'- -CAGGUUGACCAGGACGACCu------CguUCU- -5' |
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31683 | 5' | -54.7 | NC_006883.1 | + | 26351 | 0.89 | 0.113146 |
Target: 5'- gGUCCAACUGGUCCUGCUGGucccacAGguGGAa -3' miRNA: 3'- -CAGGUUGACCAGGACGACC------UCguUCU- -5' |
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31683 | 5' | -54.7 | NC_006883.1 | + | 22878 | 0.9 | 0.089462 |
Target: 5'- gGUCCAACUGGUCCUGCUGGuGCuccAGGu -3' miRNA: 3'- -CAGGUUGACCAGGACGACCuCGu--UCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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