miRNA display CGI


Results 21 - 40 of 59 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31684 3' -52.9 NC_006883.1 + 23158 0.76 0.657226
Target:  5'- -uCCUACAGGUCCAcCaGGUCCAGgUa -3'
miRNA:   3'- cuGGAUGUCCAGGUuGaCCAGGUUgA- -5'
31684 3' -52.9 NC_006883.1 + 23178 0.72 0.87523
Target:  5'- gGACCaGCAGGUCCAGuuaaacCUGGagcaCCAGCa -3'
miRNA:   3'- -CUGGaUGUCCAGGUU------GACCa---GGUUGa -5'
31684 3' -52.9 NC_006883.1 + 23352 0.7 0.92554
Target:  5'- gGACCUACAGGaCCAGuuggacCUGGagaaCCAGCa -3'
miRNA:   3'- -CUGGAUGUCCaGGUU------GACCa---GGUUGa -5'
31684 3' -52.9 NC_006883.1 + 23411 0.84 0.300623
Target:  5'- gGACCUGguccugcugguccucCAGGUCCAuCUGGUCCAGCa -3'
miRNA:   3'- -CUGGAU---------------GUCCAGGUuGACCAGGUUGa -5'
31684 3' -52.9 NC_006883.1 + 23421 0.73 0.819945
Target:  5'- gGACCUGUAGGaCCAuCUGGUCCAGu- -3'
miRNA:   3'- -CUGGAUGUCCaGGUuGACCAGGUUga -5'
31684 3' -52.9 NC_006883.1 + 23455 0.73 0.836696
Target:  5'- -uCCUcCAGGUCCAGCaGGUCCucCUg -3'
miRNA:   3'- cuGGAuGUCCAGGUUGaCCAGGuuGA- -5'
31684 3' -52.9 NC_006883.1 + 23656 1.01 0.02882
Target:  5'- -uCCUACAGGUCCAACUGGUCCAACUg -3'
miRNA:   3'- cuGGAUGUCCAGGUUGACCAGGUUGA- -5'
31684 3' -52.9 NC_006883.1 + 23718 0.66 0.99158
Target:  5'- gGACCUGgAGGaCCuGCUGGaCCAGa- -3'
miRNA:   3'- -CUGGAUgUCCaGGuUGACCaGGUUga -5'
31684 3' -52.9 NC_006883.1 + 23918 0.67 0.98046
Target:  5'- gGACCUGUAGGaCCuGCUGGaccuguugaUCCAACa -3'
miRNA:   3'- -CUGGAUGUCCaGGuUGACC---------AGGUUGa -5'
31684 3' -52.9 NC_006883.1 + 24688 0.84 0.297863
Target:  5'- -uCCUACAGGUCCAAgUGGUCCAu-- -3'
miRNA:   3'- cuGGAUGUCCAGGUUgACCAGGUuga -5'
31684 3' -52.9 NC_006883.1 + 24710 0.69 0.949374
Target:  5'- -----uCAGGUCCAAgUGGUCCAAgUg -3'
miRNA:   3'- cuggauGUCCAGGUUgACCAGGUUgA- -5'
31684 3' -52.9 NC_006883.1 + 24742 0.71 0.902227
Target:  5'- -uCCUcCAGGUCCucCaGGUCCAACa -3'
miRNA:   3'- cuGGAuGUCCAGGuuGaCCAGGUUGa -5'
31684 3' -52.9 NC_006883.1 + 26281 0.81 0.39763
Target:  5'- -uCCUACAGGUCCAGCaGGUCCucCUg -3'
miRNA:   3'- cuGGAUGUCCAGGUUGaCCAGGuuGA- -5'
31684 3' -52.9 NC_006883.1 + 26342 0.86 0.229532
Target:  5'- gGugCaACAGGUCCAACUGGUCCuGCUg -3'
miRNA:   3'- -CugGaUGUCCAGGUUGACCAGGuUGA- -5'
31684 3' -52.9 NC_006883.1 + 26371 0.75 0.727398
Target:  5'- -uCCcACAGGUggAACUGGUCCAACUg -3'
miRNA:   3'- cuGGaUGUCCAggUUGACCAGGUUGA- -5'
31684 3' -52.9 NC_006883.1 + 26407 0.69 0.962291
Target:  5'- -uCCUcCAGGUCCAggugguggaacugguACUccaGGUCCAGCa -3'
miRNA:   3'- cuGGAuGUCCAGGU---------------UGA---CCAGGUUGa -5'
31684 3' -52.9 NC_006883.1 + 26506 0.94 0.080358
Target:  5'- -uCCUGCAGGUCCAACUGGUCCuGCUg -3'
miRNA:   3'- cuGGAUGUCCAGGUUGACCAGGuUGA- -5'
31684 3' -52.9 NC_006883.1 + 26533 0.79 0.497122
Target:  5'- -uCCacCAGGUCCAACUGGUCCuGCUg -3'
miRNA:   3'- cuGGauGUCCAGGUUGACCAGGuUGA- -5'
31684 3' -52.9 NC_006883.1 + 26769 0.7 0.92554
Target:  5'- gGACCUGCAGGaCCAGUUGcaCCAGCa -3'
miRNA:   3'- -CUGGAUGUCCaGGUUGACcaGGUUGa -5'
31684 3' -52.9 NC_006883.1 + 27224 0.83 0.341344
Target:  5'- -uCCUACAGGUCCAGCaGGUCCuACa -3'
miRNA:   3'- cuGGAUGUCCAGGUUGaCCAGGuUGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.