miRNA display CGI


Results 1 - 20 of 59 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31684 3' -52.9 NC_006883.1 + 21464 0.74 0.775254
Target:  5'- -uCCUGCuGGUCCucCaGGUCCAACUg -3'
miRNA:   3'- cuGGAUGuCCAGGuuGaCCAGGUUGA- -5'
31684 3' -52.9 NC_006883.1 + 21509 0.75 0.717546
Target:  5'- -uCCUcCAGGUCCuuCUGGUCCAGgUg -3'
miRNA:   3'- cuGGAuGUCCAGGuuGACCAGGUUgA- -5'
31684 3' -52.9 NC_006883.1 + 21597 0.83 0.333788
Target:  5'- gGACCUGCuGGUCCucCUGGUCCuGCUg -3'
miRNA:   3'- -CUGGAUGuCCAGGuuGACCAGGuUGA- -5'
31684 3' -52.9 NC_006883.1 + 21665 0.82 0.389231
Target:  5'- -uCCaACAGGUCCAACUGGUCCucCUg -3'
miRNA:   3'- cuGGaUGUCCAGGUUGACCAGGuuGA- -5'
31684 3' -52.9 NC_006883.1 + 21707 0.83 0.341344
Target:  5'- -uCCUGCAGGUCCucCUGGUCCAAgUg -3'
miRNA:   3'- cuGGAUGUCCAGGuuGACCAGGUUgA- -5'
31684 3' -52.9 NC_006883.1 + 21737 0.73 0.819945
Target:  5'- -uCCU---GGUCCAACUGGUCCuGCUg -3'
miRNA:   3'- cuGGAuguCCAGGUUGACCAGGuUGA- -5'
31684 3' -52.9 NC_006883.1 + 21779 0.94 0.080358
Target:  5'- -uCCUACAGGUCCAACUGGUCCuGCUg -3'
miRNA:   3'- cuGGAUGUCCAGGUUGACCAGGuUGA- -5'
31684 3' -52.9 NC_006883.1 + 21809 0.74 0.775254
Target:  5'- -uCCUcCAGGUCCucCUGGUCCAAgUg -3'
miRNA:   3'- cuGGAuGUCCAGGuuGACCAGGUUgA- -5'
31684 3' -52.9 NC_006883.1 + 21862 0.66 0.990406
Target:  5'- gGACCaGCAGGUCCAGuaGGaCCAGg- -3'
miRNA:   3'- -CUGGaUGUCCAGGUUgaCCaGGUUga -5'
31684 3' -52.9 NC_006883.1 + 21863 0.73 0.836696
Target:  5'- -uCCUGCuGGUCCAAgUGGUUCAcCUg -3'
miRNA:   3'- cuGGAUGuCCAGGUUgACCAGGUuGA- -5'
31684 3' -52.9 NC_006883.1 + 21911 0.66 0.991355
Target:  5'- -uCCUcCAGGUCCuagugguggucCUGGUCCuGCUg -3'
miRNA:   3'- cuGGAuGUCCAGGuu---------GACCAGGuUGA- -5'
31684 3' -52.9 NC_006883.1 + 21964 0.66 0.990406
Target:  5'- -uCCaAguGGUCCucCUGGUCCuGCUg -3'
miRNA:   3'- cuGGaUguCCAGGuuGACCAGGuUGA- -5'
31684 3' -52.9 NC_006883.1 + 21969 0.67 0.982504
Target:  5'- gGACCUGCAGGaCCAGgaGaUCCAGu- -3'
miRNA:   3'- -CUGGAUGUCCaGGUUgaCcAGGUUga -5'
31684 3' -52.9 NC_006883.1 + 22869 0.86 0.235154
Target:  5'- gGugCUcCAGGUCCAACUGGUCCuGCUg -3'
miRNA:   3'- -CugGAuGUCCAGGUUGACCAGGuUGA- -5'
31684 3' -52.9 NC_006883.1 + 22914 0.78 0.565895
Target:  5'- gGACCUGCuGGUCCugaUGGUCCAAgUg -3'
miRNA:   3'- -CUGGAUGuCCAGGuugACCAGGUUgA- -5'
31684 3' -52.9 NC_006883.1 + 22972 0.85 0.258801
Target:  5'- -uCCUcCAGGUCCAACUGGUCCuGCUg -3'
miRNA:   3'- cuGGAuGUCCAGGUUGACCAGGuUGA- -5'
31684 3' -52.9 NC_006883.1 + 23026 0.68 0.967495
Target:  5'- -uCCUccagguaucGguGGUCCAACUGGUCCu--- -3'
miRNA:   3'- cuGGA---------UguCCAGGUUGACCAGGuuga -5'
31684 3' -52.9 NC_006883.1 + 23071 0.76 0.667379
Target:  5'- -uUCUcCAGGUCCAACUGGUCCu--- -3'
miRNA:   3'- cuGGAuGUCCAGGUUGACCAGGuuga -5'
31684 3' -52.9 NC_006883.1 + 23098 0.77 0.616496
Target:  5'- -uCCUucaaaucCAGGUCCAACUGGUCCcACa -3'
miRNA:   3'- cuGGAu------GUCCAGGUUGACCAGGuUGa -5'
31684 3' -52.9 NC_006883.1 + 23131 0.75 0.737168
Target:  5'- -uCCcACAGGUCCAACUGGaCCAGa- -3'
miRNA:   3'- cuGGaUGUCCAGGUUGACCaGGUUga -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.